barSeed - Barley Seed Development Database

Probe CUST_22116_PI390587928

Source Contig U35_26738

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22116_PI390587928	Hv_44K_v2	TAATACGCCAACGTGTCAAGGGATCATTATAATAAGAACCCCTTTACCAGATGGAAAAAA	1102	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360285	3555	9e-22	3152 - 3206	100	55 / 55	plus	ABC01846 ABC24430
MLOC	MLOC_53230.1	1778	9e-22	471 - 525	100	55 / 55	plus	ABC01846
MLOC	MLOC_53230.2	1517	9e-22	336 - 390	100	55 / 55	plus	None
JLOC1	JLOC1_34175.1	1755	5e-22	438 - 492	100	55 / 55	plus
Harvest35	U35_26738	1173	3e-25	1103 - 1162	100	60 / 60	plus

Contig Sequence (1173 bp)

>U35_26738 1173 Hv_44K_v2
GGCTAACCATACACTTGATTCGACATTAATTTCTTTTCGCAAGCAAAATTCAATTTTCAA
ACTTCAATCTTTTGGGACCACATTAACTGAAAAGTACAAGATCTCCTAACAATGTTCTCA
ATGATAAAAAAAAGATATGGCTATATTCGAGCTAGCTACAGAGTCAATCTTCTTCATCAT
ATAGACCATTTACTCTGTGACCATAGTATCAACATCATTATTAATTCTTGTTTATAAAGT
TACCCCTTGCAAATATGAACATCTGGACTTTTCAGATGTACTACATCTCCTAATGAAGGA
TAGAAAATATACCTCTGTTTGAGTTGGATAAAAAATTCTGCATATGACTTTTGTCCTTTA
GAATTTATATTAGATGTTGAACATTGATTTAGGCCCTGTTTGGAACCACCTAGATTATAT
AATCCATTTTTTATAATCTATTATGTTTCCAAACAAGACAACTTATAGTGTAGATTATAA
AAACTAGATGGATAGATTATTAAAAACTCATAATCTACTCTATACCAGCTAAAATCAGAT
TATGGATTGCTAATGACCCATTACCCTTGTAAAGTTGGAGATAATAACATTTCTACCACC
GCTACCCTCTTTTTAAAAAAAACAGATGGTAGATAGGTCATTATGCAATGTAAAACCTGG
ATTACAGTTTATATAATCTGGCCTCCAAACATGTTCACCTAGATTATTTTTATAAACCAG
ATTATATAATTTATCTTCATAATCCAGATTATCATAATCTATTATGGTTCCAAACAGGGC
CTTAGTTTGATTAGAAACTTTACGTGCTCTCTTTTAATCCGGAGTCTCGAAAAGTTTCAA
ACACCATCTGTGCTTAGCTTATATACCCCTTGTTGTCTTTTTTTCTTGTCATGGTGAAGA
TCAGTAGCCACTGTTATCAGCAGAAGTGGTGGTGTACTGGTTTTGGGGATATATTCCGCT
GTGTAGAATTTTTGGGCAAGCTGCATGCCATTTGTACGAATTTAGGTAGTTTATTTGCCA
GCTCATCCAACACTAACAGAATTTGTGCTGTGCTCTTTTCCCTGGTGGGGCAGTAGCATG
CACTCATCTACTTGAACAATAATAATACGCCAACGTGTCAAGGGATCATTATAATAAGAA
CCCCTTTACCAGATGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_26738 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None