barSeed - Barley Seed Development Database

Probe CUST_22109_PI390587928

Source Contig U35_38715

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22109_PI390587928	Hv_44K_v2	GTCGTCTTCCTCGCGCTCGTCTTCACGCCGCGCCGCGGGGACACCCTCGCCGCCCCCGCT	213	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365482	3977	2e-24	2196 - 2255	100	60 / 60	plus	ABC06446 ABC13970 ABC21005 ABC36750
MLOC	MLOC_71571.2	1739	2e-24	380 - 439	100	60 / 60	plus	ABC13970
MLOC	MLOC_71571.1	2306	2e-24	401 - 460	100	60 / 60	plus	ABC13970
JLOC1	JLOC1_47582.1	3752	8e-25	332 - 391	100	60 / 60	plus
Harvest21	ABC34615	274	3e-25	214 - 273	100	60 / 60	plus
Harvest35	U35_38715	274	3e-25	214 - 273	100	60 / 60	plus

Contig Sequence (274 bp)

>U35_38715 274 Hv_44K_v2
GGAATCCAAACCCCTTCCCCCATGGCCTGATCCCATCGACCGATCGAACCAGCACACCAC
GGCGGCCCCGCCGCGGCCACCGCCTCCTGCTACCGCCCGATGGGCCTCCTCAGCTCCCTG
CGGCCGCACCGCCGCGGGAGCAGCGGCGGCGCGCAGGCGCAGTGGCAGTGGTCCTTCCTC
GACGCCGTCTGGGCGGTGTTCCTCGTGGCCGAGGTCGTCTTCCTCGCGCTCGTCTTCACG
CCGCGCCGCGGGGACACCCTCGCCGCCCCCGCTG

Homology of Contig U35_38715 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None