barSeed - Barley Seed Development Database

Probe CUST_22102_PI390587928

Source Contig U35_14764

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22102_PI390587928	Hv_44K_v2	CGTTTGAAATCTTGTAAGATTTGTATATCCAGTGGCTATGGAAGGTGTAATTGTATGTTG	1191	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355398	1820	2e-24	1168 - 1227	100	60 / 60	plus	ABC05965 ABC33941
MLOC	MLOC_39958.1	654	2e-24	291 - 350	100	60 / 60	plus	ABC05965 ABC33941
MLOC	AK354089	1136	7e-23	1077 - 1136	98	59 / 60	plus	ABC04632 ABC04633 ABC05965 ABC33941
JLOC1	JLOC1_26103.1	512	8e-25	291 - 350	100	60 / 60	plus
Harvest21	ABC51382	331	3e-25	252 - 311	100	60 / 60	plus
Harvest21	ABC33941	292	3e-25	66 - 125	100	60 / 60	minus	ABC33941
Harvest21	ABC05965	1230	3e-25	1154 - 1213	100	60 / 60	plus	ABC05965
Harvest35	U35_14764	1373	3e-25	1192 - 1251	100	60 / 60	plus
Harvest35	U35_14762	617	3e-25	529 - 588	100	60 / 60	plus

Contig Sequence (1373 bp)

>U35_14764 1373 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGACACAGGCACAGCAGCACCCCACGTAAAGCGGACTCGGT
CGATCGCCAAAGCTCACAGGTGGTTGCTGCAATGGAGTCCACGAAGGTCTCCGCGCTGCT
GGTTCTGGCCATGCTCGTGCTCTCCTCGCCCACTGTCGTGCTCGCCTGCTCCCCCGCCTC
CGGGTGCGGCAGTGGCACGCCGTCGAGCGGCACGCCCTCGGGCGGCGGCATCAGCATCTC
CCCGGTCATCGGCGTCGTCGGTGGCACCGTCACTCCGGTCATCGGCGTCGTCGGTGGCAC
CGTCACTCCGGTCATCGGTGGCGCCGCCCCGACCGCGGGCGGCGTCGTCGGCAAGGTCAC
CCCTGCCGTAGGCGGCATGGTCCCTGCCGTTGGCGGCGTCGCCGGCAAAGTTGGCGGCAT
GGTCGCTCCAGTGGTCGGCACCGTCGGCGGCGTGGCCGGCAAAGTCACCCCCGCCGTAGG
CGGCATGGCCCCTGCCGTTGGCGGCGTGGTCGGCACCGTTGGCGGCATGGTCGCTCCAGT
GGTCGGCACCGTCGGCGGCGTGGCCGGCAAAGTCCCGGCGGCCGGGGGAGTCGTCTCCCC
CGTCGTCGGCATCATCGGTCCCATCATCGGCATCGGCGGGAGCCCGGCGTCCCCCTCGCC
CAAACGCCACGGCGGACGCAAGGCGTGCCCTCCCTCACCCCCGACCCCGACCCCGTCTCC
CCCGACGCCCACCCCGGCGCCGACGCCCCCGACGCCCACGCCGTCCTCCGACACGTGCCC
GATCGACACGCTGAAGCTGGGCGTGTGCCTGGACCTGCTCGGCAACGAGCTCCACATCGG
CGACGCCAGCGTCAAGTGCTGCCCCCTGGTGCAGGGCATCGCCGGGCTCACCGCCGCGGC
GTGCCTCTGCACCGCCATCAAGGCCAAGGTGCTCAACCTCGCCCTTTACGTGCCCCTCGC
CCTCCAGCTGCTCGTCAACGACTGCGGCTGCGCCGTGCCGCCGGGATACACCTGCGCCTG
ATCCGTCCGTCCGTCCGTTCCACGTTCCCGCGCATGCATGCAGTGCAGTGCATAATTTAT
TGTGCCACGAGTTTGAAATCAAGGTTGTGTCGATGAAGCCACTCGCTTCCGGTTTGTTCA
TTTAGTGCTACTACAACATTTATTTTATTTTTATTATTATTGTCATCATTCCGTTTGAAA
TCTTGTAAGATTTGTATATCCAGTGGCTATGGAAGGTGTAATTGTATGTTGAAAAAAAAA
AAAAAAAAGCTCAAACTATTTATCCTGGTGTCTGATGTGAAAAAAAAAAAAAAAAAAAGT
CCCCTTGAACAACAACTTCATTTTTCTACTGATTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14764 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None