barSeed - Barley Seed Development Database

Probe CUST_22094_PI390587928

Source Contig U35_26742

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22094_PI390587928	Hv_44K_v2	TGATGGCACAATATCGAGAAGCAGGTTATGGGTTTGGGGACAAAATCAGGGCTCAGATTA	533	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75498.2	2515	7e-23	361 - 420	98	59 / 60	plus	ABC12425 ABC19689
MLOC	MLOC_75498.5	2929	7e-23	2531 - 2590	98	59 / 60	minus	ABC12425 ABC19689
MLOC	MLOC_75498.3	3351	7e-23	2547 - 2606	98	59 / 60	minus	ABC12425 ABC19689
MLOC	MLOC_75498.4	2041	7e-23	1237 - 1296	98	59 / 60	minus	ABC19689
MLOC	MLOC_75498.1	2809	7e-23	2104 - 2163	98	59 / 60	minus	ABC12425 ABC19689
JLOC1	JLOC1_50366.13	2538	4e-23	746 - 805	98	59 / 60	plus
JLOC1	JLOC1_50366.12	2077	4e-23	746 - 805	98	59 / 60	plus
JLOC1	JLOC1_50366.11	1759	4e-23	640 - 699	98	59 / 60	plus
JLOC1	JLOC1_50366.10	2808	4e-23	628 - 687	98	59 / 60	plus
JLOC1	JLOC1_50366.9	2538	4e-23	358 - 417	98	59 / 60	plus
JLOC1	JLOC1_50366.8	2987	4e-23	346 - 405	98	59 / 60	plus
JLOC1	JLOC1_50366.7	1677	4e-23	346 - 405	98	59 / 60	plus
JLOC1	JLOC1_50366.6	3230	4e-23	589 - 648	98	59 / 60	plus
JLOC1	JLOC1_50366.5	2108	4e-23	316 - 375	98	59 / 60	plus
JLOC1	JLOC1_50366.4	1422	4e-23	303 - 362	98	59 / 60	plus
JLOC1	JLOC1_50366.3	2271	4e-23	303 - 362	98	59 / 60	plus
JLOC1	JLOC1_50366.2	2995	4e-23	566 - 625	98	59 / 60	plus
JLOC1	JLOC1_50366.1	1883	4e-23	303 - 362	98	59 / 60	plus
Harvest35	U35_26742	744	3e-25	534 - 593	100	60 / 60	plus

Contig Sequence (744 bp)

>U35_26742 744 Hv_44K_v2
CTGCTCGTCGGCCCCGCGGTTTCGCTCCGCCCCCCCGCGACCTCCTACCCCCATCCACCC
AAGGAAGCAAGATTGGTTCCCTGAAGTGAAGATCCATCCGGGCGTAGTTCCTTCCTCTGT
TGTTGACAGACAGCAATGGATATAGATGATGTGATTTGCAACTTGCGTGTTGTTGGCGTG
CCAACCAAGAGTGCCATATACACATGGGGATATAACCAGAGTGGGCAGACTGCACGCAAG
GGCAAGGAGCGTCACTTGAGGATCCCCAAGAGCCTACCTCCCAAACTATTCACCTGTAGG
GATGGCGAGAACCTCAGATGGACTGATATTGCATGTGGCCGTGCACACACTGCTGCAGTC
GTTTCTGACGGGTCACTCTTCACCTGGGGTGCAAATGACTTTGGTCAGTTGGGAGATGGG
ACAGAGGAGAGTGCAAAGGAACCTAAAAAGGTCAATGCACTGGCGACTGAGTTTGTGAAG
TCGGTGTCCTGTGGTGCACACTGTACAGCTGCTATTGCTGAACCTCGAGAAAATGATGGC
ACAATATCGAGAAGCAGGTTATGGGTTTGGGGACAAAATCAGGGCTCAGATTACCCTCGC
CTATACTGGGGTGCTTTTGCACCAAACACGGTAATTCGGCAGGTTTCTTGTGGAGCTGTT
CATGTGGTGGCCCTATCGGATGATGGCCTGCTGCAAGCATGGGGCTACNATGAGTATGGT
CAGCTTGGCAGAGGTTGTACTTCT

Homology of Contig U35_26742 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g40260.1	480	3e-128	protein\|Regulator of chromosome condensation domain containing protein, expressed
Brachypodium v1_2	Bradi1g15060.1	481	1e-138
Arabidopsis v10	AT3G02300.1	471	2e-98	Regulator of chromosome condensation (RCC1) family protein \| chr3:461551-463929 FORWARD LENGTH=471