barSeed - Barley Seed Development Database

Probe CUST_22087_PI390587928

Source Contig U35_38720

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22087_PI390587928	Hv_44K_v2	CTTGCGAATGTCCATCCATGATTAAGGGGAAATGAATAAATATAAACGGCTTACTTGTTC	17	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50010.2	565	7e-23	428 - 487	98	59 / 60	minus	ABC02747 ABC34622
MLOC	MLOC_50010.1	515	7e-23	355 - 414	98	59 / 60	minus	ABC02747 ABC34622
MLOC	MLOC_31064.1	316	7e-23	33 - 92	98	59 / 60	plus	None
JLOC1	JLOC1_20462.1	308	4e-23	25 - 84	98	59 / 60	plus
Harvest21	ABC34622	601	3e-25	18 - 77	100	60 / 60	minus	ABC34622
Harvest35	U35_38720	601	3e-25	18 - 77	100	60 / 60	minus

Contig Sequence (601 bp)

>U35_38720 601 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAACAAGTAAGCCGTTTATATTTATTCATTTCCCCTTAATCAT
GGATGGACATTCGCAAGCCATAGCATCTAGGTGGACTTATACAATGTAACAAATTATGTG
AGGTAGACCTTTGCTCATCAACTATACAAACATTCCAATCCAATCACATGGTCGAAAGAG
TGACAGGGTCTGCTTAGGAGCTTACTAACAGCAATGGTGGACCTTTGTTCCACGGGACAG
AAGTAGGCAATAACATCCCTGTATGGAGTGTCTCCGCTATATTTCTTCAGGTTGACATAA
CCAGACATTAGCTTAATATAGCCGCCGCCACACTCAATTTCCTGCTCAAACTTTATGGAG
TACTGGACCACGAATGTTCGGCCCTTGTTACTGAACTCCGGTATCTTGGCTGAGATAGCA
AAATGCCTAGCATCTATCGTTGTTTGAATGCCCCGGAGGCGAGCAGGAGCACCGAGGAGA
GCGTGAGGAGGCGGTGCAGGAGCTGGCGGTCGCCCCGCCGGCGGCTGCTACCCATCACCG
GTGGGTGGCTCACCGAAGACGAGGAGTAGGTGGTGGCTGCTGCTGCTTCTGTCGGGCTTT
C

Homology of Contig U35_38720 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None