barSeed - Barley Seed Development Database

Probe CUST_22060_PI390587928

Source Contig U35_38731

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22060_PI390587928	Hv_44K_v2	CCTATCACTACGCCGCGCTCGCGCCCTCCCACCTCCTGCTCTTCCACTCCATGCACGCCT	479	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374053	2545	2e-24	497 - 556	100	60 / 60	plus	ABC17850 ABC19513 ABC34639
MLOC	MLOC_59001.1	4805	2e-24	4155 - 4214	100	60 / 60	minus	ABC34639 ABC49708
MLOC	MLOC_59001.2	3437	2e-24	2772 - 2831	100	60 / 60	minus	ABC34639 ABC49708
MLOC	MLOC_58999.1	5833	2e-24	5168 - 5227	100	60 / 60	minus	ABC34639 ABC49708
JLOC1	JLOC1_38366.1	1580	8e-25	915 - 974	100	60 / 60	minus
Harvest21	ABC34638	539	3e-25	480 - 539	100	60 / 60	plus
Harvest35	U35_38731	539	3e-25	480 - 539	100	60 / 60	plus

Contig Sequence (539 bp)

>U35_38731 539 Hv_44K_v2
GGCCTGCCCCCACCGTGAAACACTCGAACCCGGCCGTTCCCCGCCGCCGACCGCCGTGGC
CGTGGCCGTGGGCGAGACACCTCCGATGCCGTACCGCGACTGGGCCAACCTGCCGGAGCT
GCCACTGGCGGAGGTGCTGCGGGGCCTCCTTCCCTGCATCCGGTCGCTCTACGCCTTTGC
GGGGACGTGCCATCCCTGGCGAAGCCTGCTCCGCGCCTCCGCCGCCGATCTCATCCGCCC
CCGCGTCCCGCCGCTCCTCCTCCTCTGCCCCGACTTCCGCCTGGTGCCCTTCTCCCCGCT
CGTCGCCCCCCAGTCCCTCTCCTACCCCATCCCCGCCCCGGCGGACGGCGCCACGCTCCT
CTCCGTCTCACGCGGCCACCTCATCCTCCTCCACCGGGGCGTCTTTAATAGCCTACACCT
CGTCGATGCCCTCACCGGTGCCGAGCGCCGCGCGCTCCAGCTCCCTTCCCCGCACTTCCC
CTATCACTACGCCGCGCTCGCGCCCTCCCACCTCCTGCTCTTCCACTCCATGCACGCCT

Homology of Contig U35_38731 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47030.1	383	7e-55	protein\|expressed protein
Brachypodium v1_2	Bradi3g52410.1	374	2e-67
Arabidopsis v10	None