barSeed - Barley Seed Development Database

Probe CUST_22047_PI390587928

Source Contig U35_14786

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22047_PI390587928	Hv_44K_v2	GTACCATGCATAACATGGCACTACCTGTGTGTAACCAAAATACCAAATCAAAGTTATAAA	1200	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.472	1.391	0.543	0.433	2.713	0.882
Raw	16.639	12.289	3.507	3.579	12.135	2.685

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10050.2	1757	2e-24	1654 - 1713	100	60 / 60	plus	ABC07394
MLOC	MLOC_10050.1	1527	2e-24	1441 - 1500	100	60 / 60	plus	ABC07394 ABC08009
JLOC1	JLOC1_6552.1	1536	8e-25	1433 - 1492	100	60 / 60	plus
Harvest21	ABC07394	1272	3e-25	1161 - 1220	100	60 / 60	plus	ABC07394
Harvest35	U35_14786	1297	3e-25	1201 - 1260	100	60 / 60	plus

Contig Sequence (1297 bp)

>U35_14786 1297 Hv_44K_v2
TCGAGCACTGTTGGCCTATGGATCAAGACACAAACCAGAGTCCACAGCAGAGCAACACTA
CTACCACCCCCCAGTGGCAAATACAGCATAGCGACAAGGCTCTAGCAGCTTAGCAGCTGA
AGATGGCCGGGGTACTCTCTGTCAAGGCCGTCGCGCTCGCCGCCGTGCTTGCTGCCGCGT
ATGTCTCCTCGGCGGCGGCGGTGAACCTCAACACCTCCGCCGTGTCTTACAGCTCCGCGT
GGCTCCCGGCCAGAGCGACCTGGTACGGAGCGCCCAACGGCGCCGGGCCCGACGACAACG
GCGGCGCTTGCGGCTTCAAGCACGTGAACCAGTACCCCTTCTCCTCCATGACCTCCTGCG
GCAACCAGCCCCTGTTCAAGGACGGCAAGGGCTGCGGCTCCTGCTACCAGATACGATGCA
GCGGCGACCGCTCCTGCTCCGGCAACATCGAGACGGTGATGATCACCGACATGAACTACT
ACCCGGTCGCCCAGTACCACTTTGACCTGAGCGGCACGGCCTTCGGCGCCCTGGCCAAGT
CGGGCCTCAACGAGAAGCTCCGCCACTCGGGCATCATCGACATCCAGTTCAGGAGGGTGC
CGTGCAACTTCCCCGGCCTCAAGATCAACTTCCACGTGGTGGAGGGCTCCAACGCGGTGT
ACCTGGCGGTGCTGATCGAGTACGAGGACATGGACGGCGACGTGATCCAGGTGGACATGA
AGGAGGCCAACTCGGGGTCGTGGATGGCGATGCGCGAGTCGTGGGGATCCATCTGGCGGA
TGGACTCCAACCACCGCCTCCAGGGGCCTTTCTCCATGCGCATCACCAGCGACTCCGGCA
AGAAGCTGGTGGCCAACAATGTCATCCCGGCCAACTGGAGGCCCAACACCGACTACCGCT
CCTTCGTCCAGTTCAGTTGATTGGCCCCGACCGGCCCATGAGCGGCCACGTGCGCCTGCA
TCATGCACGCATGCATGCATGCATGCGCTCTGGCCCCTCTGCTGGTTGCAGTTCATCACT
CGGTTGATCGAAATCATTTGCCTTATTTTATTTTTTGTATTTTGCGTGGGATCACGGAGC
TTGAGATGCCGTCTGTCTGGTGTCATATGTGGGGTCGTCGTCTAGCGTCGTGAACATGTG
TGGGAAATGTAGGAAGCATGGTTTGCATGTGCTCTCCCGCCCACTGACTCTGTGTACGGT
GTACCATGCATAACATGGCACTACCTGTGTGTAACCAAAATACCAAATCAAAGTTATAAA
TTATACTATACGTAACTAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14786 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g40700.1	276	4e-146	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi3g33110.1	544	2e-157
Arabidopsis v10	AT1G65680.1	273	1e-68	\| Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 \| expansin B2 \| chr1:24427266-24428399 FORWARD LENGTH=273