barSeed - Barley Seed Development Database

Probe CUST_22033_PI390587928

Source Contig U35_38741

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22033_PI390587928	Hv_44K_v2	ACGGACAACGAGATCAAGAACTTCTGGAACAGCTGCCTCAAGAAGAAGCTGCGGCAGCGG	403	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372534	1162	2e-24	426 - 485	100	60 / 60	plus	ABC14337 ABC35495
MLOC	MLOC_59184.1	1017	2e-24	109 - 168	100	60 / 60	plus	ABC35495
JLOC1	JLOC1_38499.1	1214	8e-25	329 - 388	100	60 / 60	plus
Harvest21	ABC34651	489	3e-25	404 - 463	100	60 / 60	plus
Harvest21	ABC14337	1286	8e-21	384 - 441	97	56 / 58	plus	ABC14337
Harvest35	U35_38741	489	3e-25	404 - 463	100	60 / 60	plus
Harvest35	U35_18213	1350	8e-21	421 - 478	97	56 / 58	plus

Contig Sequence (489 bp)

>U35_38741 489 Hv_44K_v2
CGAACCACTATACACTGACGAGGTAGCTCGCCGGTTGCTCGGCCGTCTGTTCGCTCGTCG
TCCCTTGAGCCGAGCGGGCGGGCGGGCGGGCGGGAGAATGGGACGGCACGCGGGCACCGG
CGGCGGCGTCCAGCAGAAGCTGCGCAAGGGGCTCTGGTCTCCCGAGGAGGACGAGAAGCT
CTACAACCACATCATCCGCTACGGCGTCGGGTGCTGGAGCTCCGTGCCCAAGCTCGCCGG
TCTGCAGAGGTGCGGCAAGAGCTGCCGGCTGCGGTGGATCAACTACCTGCGCCCCGACCT
GAAGCGGGGGAGCTTCTCGCAGCAGGAGGAGGACGCCATCGTCGGCCTGCATGAGATCCT
GGGGAACAGGTGGTCGCAGATTGCATCTCACTTGCCGGGCCGGACGGACAACGAGATCAA
GAACTTCTGGAACAGCTGCCTCAAGAAGAAGCTGCGGCAGCGGNGAATCGACCCCAGCAC
CCACAAGCC

Homology of Contig U35_38741 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g50720.1	302	3e-83	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi2g47590.1	284	3e-85
Arabidopsis v10	AT5G26660.1	352	1e-69	\| Symbols: ATMYB86, MYB86 \| myb domain protein 86 \| chr5:9331775-9333044 REVERSE LENGTH=352