barSeed - Barley Seed Development Database

Probe CUST_22026_PI390587928

Source Contig U35_14791

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22026_PI390587928	Hv_44K_v2	AAGTGGAGTTTTGTGCTCTCAGTTGCTTGATACATGTGATGGCCAAATGCTTCTTAGCGA	1531	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.647	0.817	0.961	1.444	1.001	1.324
Raw	237.903	484.651	502.022	1163.909	289.333	409.923

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_47416.1	334	2e-23	60 - 117	100	58 / 58	minus	ABC01878
JLOC1	JLOC1_30579.1	337	1e-23	63 - 120	100	58 / 58	minus
Harvest21	ABC01878	1569	4e-24	1444 - 1501	100	58 / 58	plus	ABC01878
Harvest35	U35_14791	1659	3e-25	1532 - 1591	100	60 / 60	plus

Contig Sequence (1659 bp)

>U35_14791 1659 Hv_44K_v2
TCGAGCACTGTTGGCCTACCTGGTTTGTTCAGGCACCCGCCACATAACCAGCGAGACCCC
TGAAACCCTTGAAAATTGCACCCCCGTACATCCCCCTTTCCTCTCCGGTCTAACCAAAGT
CCGACCTCCGACGAGCTACCACCCGGCCATGGCGACCACCGACATCCGCCTCTCCATCGC
GCACCAGACCCGCTTCGCGCTCCGCCTTGCCTCCGCCATCTCCTCGCCCTCCCACGCCAA
GGGATCCTCCGGCAACGCTGCCTTCTCCCCGCTCTCGCTCCACGTTGCGCTCAGCCTCGT
CGCGGCCGGCGCCGGCGGCGCCACGCGTGACCAGCTTGCTGCCACGCTCGGGGCCGCGGA
GAAAGGCGACGCCGAGGGCCTCCACGCGCTCGCCGAGCAGGTGGTGCAGGTCGTGCTCGC
CGACGCGTCGGGCGCTGGCGGCCCGCGCGTCGCCTTCGCCAACGGCGTCTTCGTCGACGC
CTCGCTCAAACTCAAGCCTTCCTTCAAGGATCTCGTAGTGGGCAAGTACAAGGCCGAGAC
GCAGTCCGTGGACTTCCAAACTAAGGCTCCTGAAGTTGCTGGTCAAGTGAACTCCTGGGT
AGAAAAAATCACAACAGGTCTCATCAAAGAGATCCTCCCTGCAGGGTCTGTTGACAGTAC
CACTAGACTGGTTCTTGGTAATGCCCTTTATTTTAAAGGAGCTTGGACTGAGAAGTTTGA
TGCATCTAAGACAAAAGACGAGAAGTTCCACCTCCTTGATGGGAGCTCAGTTCAAACACC
ATTCATGTCCAGTACAAAGAAGCAATACATTTCGTCTTATGACAGCTTGAAAGTACTGAA
GCTTCCTTACCAGCAAGGCAGGGACAAGAGGCAGTTCTCCATGTACATTCTTCTTCCAGA
AGCACAGGATGGTCTCTGGAACTTGGCCAACAAGTTGAGCACCGAACCAGAGTTCATGGA
GAAGCATATGCCAATGCAGAAGGTTCCAGTCGGGCAATTCAAGCTCCCGAAGTTCAAGAT
ATCATTTGGGTTTGAAGCGTCTGATATGCTCAAAGGTTTGGGTCTCCAGCTGCCATTCAG
CTCAGAGGCAGATCTTTCGGAGATGGTGGATTCACCCGCAGCACGGAGCTTGTATGTCTC
ATCCGTTTTCCACAAGTCGTTTGTCGAGGTGAATGAAGAAGGCACCGAGGCTGCGGCAGC
AACTGCTGCAGTGGTCACACTTAGGTCACTGCCTGTAGAGCCCGTGAAGGTGGATTTCGT
TGCGGATCACCCTTTCCTCTTCCTTATCCGAGAGGACCTCACAGGCGTGGTGCTATTCGT
CGGTCATGTGTTCAATCCCTTGGTGTCTGCATAATGTGTTTGTTCTGGATCGCTGCATTG
GCAGTGGCCTCGACTGTCACATGTGAGTGGAGGGTTTCAACTTTAGATCATGCTGCCTGT
GCAATAAATCGAGTGGATGTTTTTGTTTTCGAATAATGGCTTGCTTGATGTATGAAGGTT
GTGGTGAGTTGGTGACAATAAATAAAAAAAAAAGTGGAGTTTTGTGCTCTCAGTTGCTTG
ATACATGTGATGGCCAAATGCTTCTTAGCGAAGCATGAACCATGGTCTTTGCATAATTTG
GGTGATTGATCTGGATTGTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14791 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g41438.1	406	2e-171	protein\|serpin domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g14730.1	402	0.0
Arabidopsis v10	AT1G47710.1	391	7e-112	Serine protease inhibitor (SERPIN) family protein \| chr1:17558271-17560061 FORWARD LENGTH=391