barSeed - Barley Seed Development Database

Probe CUST_21988_PI390587928

Source Contig U35_28414

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21988_PI390587928	Hv_44K_v2	GTTAAATGAACGCAAAAAGGTAATCAACTTTACCAGAAGTGGCAAAAGGAACAGGCGAAG	146	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33039.1	543	2e-24	349 - 408	100	60 / 60	minus	ABC01977
MLOC	MLOC_33039.2	641	2e-24	348 - 407	100	60 / 60	minus	ABC01977
MLOC	MLOC_33039.3	767	2e-24	347 - 406	100	60 / 60	minus	ABC01977
Harvest21	ABC01977	966	3e-25	764 - 823	100	60 / 60	minus	ABC01977
Harvest35	U35_28414	654	3e-25	147 - 206	100	60 / 60	plus

Contig Sequence (654 bp)

>U35_28414 654 Hv_44K_v2
ATGGGCCGTATTATTGGAGGAACCTCTCAAGTTTGCCAAACATTCGATTGAGTCCACGGA
CCAAGAATTGCTACCCGGGAAGAAGGCTAACAGGGTACTTTCTGAGATTACTAATTCATG
AATATATTAGTTATGAACTGCAACCCGTTAAATGAACGCAAAAAGGTAATCAACTTTACC
AGAAGTGGCAAAAGGAACAGGCGAAGATAGAGCGTGAGGGTAAAGATGTTATGATTACTG
CATTCTCCAAGATGGTCGGTTATGCTCTTCAGGACGTCACATTGAGATACTGTCCAAGGA
AGGAATCAGTGCTGAGGTGATCAACCTCCGATCAATTAGGCCACTGGATAGAGCCGCCAT
AAATGCATTTGTTAGGAAAACAAATAGATTGGTGACTCTTGAAGAAGGCTTCCCCCAGCA
TGGTGTTGGTGCTGAGATATGCATGTCTGTTGTAGAAGAAAGATTTGAGTATCTTGATGC
TCCAATTGAGAGGATTGCTGGAGCTGATGTACCCATGCCCTATGCTCCCAACCTTGAGAG
ATTGGCTGTCCCACAGGTTAGCTTGATGTTTGTTTGCCTAGTGCATAGAGATGCCGTCGT
ATGTCGTGTACAAGGGTAAGGTTCTCGGAGTCTACGATGATTGGGAGGAGTGTC

Homology of Contig U35_28414 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g34810.2	372	3e-52
Arabidopsis v10	None