barSeed - Barley Seed Development Database

Probe CUST_21958_PI390587928

Source Contig U35_28420

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21958_PI390587928	Hv_44K_v2	AGTTTGGTGGAGAGGTTGAGATAGTTACCAGCATAGAGCAAGTCCGAGCTGCTATACATT	527	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363231	3024	2e-24	1940 - 1999	100	60 / 60	plus	ABC14590 ABC17101 ABC31860 ABC33337
MLOC	MLOC_40238.2	2254	2e-24	1157 - 1216	100	60 / 60	plus	ABC14590 ABC17101 ABC31860 ABC33337
JLOC1	JLOC1_26294.1	2016	8e-25	943 - 1002	100	60 / 60	plus
Harvest21	ABC27277	644	3e-25	528 - 587	100	60 / 60	plus
Harvest35	U35_28420	644	3e-25	528 - 587	100	60 / 60	plus

Contig Sequence (644 bp)

>U35_28420 644 Hv_44K_v2
GGCCGATTCATATGTACATGTTGTCCAAGCCCAGGTCAACATGGCATTTGGGAGGTTTGA
TGCAGCTATTGCCATAGCTGAGAAGGCTAAAGCTGTTGATCCTGCAAATGCAGAGGTTGG
ATTGATTCTGAATAACATGAGGCTGGTAGCGCGGGCTCGAGCTCAGGGGAATGACCTTTT
TAAGGCGGGCAAGTTTGCCGAGGCATCTATTGCCTATGGTGAAGGGCTCAAGCATGAGCC
CTTGAATCCTGTGTTGTACTGCAACAGAGCAGCTTGCTGGTCGAAGTTAGGTCGGTCAGC
GAAAGCCGTTGAAGACTGCAATGAGGCGCTGAGGATCCAACCTAGCTACACAAAAGCTCT
CTTAAGGCGGGCAGCGTCCTATGCAAAGCTTGAGCGTTGGGCTGATTGTGTGAGGGACTA
TGAGGTGCTTCGCAAGGAGCTTCCTGGTGACACGGAGGTCGCAGAGTCATTGTTCCATGC
CCAAGTCGCACTGAAGACAACCCGTGGTGAGGAGGTATCAAATATGAAGTTTGGTGGAGA
GGTTGAGATAGTTACCAGCATAGAGCAAGTCCGAGCTGCTATACATTCGCCCGGNGTGAC
TGTTCTTTACTTCATGGCAACAATGAATCAGCAGTGCGCACAGA

Homology of Contig U35_28420 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g42960.1	693	2e-109	protein\|TTL1, putative, expressed
Brachypodium v1_2	Bradi2g14710.1	680	8e-119
Arabidopsis v10	AT1G53300.1	699	1e-77	\| Symbols: TTL1 \| tetratricopetide-repeat thioredoxin-like 1 \| chr1:19879726-19882375 FORWARD LENGTH=699