barSeed - Barley Seed Development Database

Probe CUST_21930_PI390587928

Source Contig U35_16457

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21930_PI390587928	Hv_44K_v2	ACGTCCATATGTATGCCCAGATTACTCCAATTATGTTTACATTCTCAACATATGGAGTTT	699	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55521.5	848	2e-24	787 - 846	100	60 / 60	plus	ABC01920
MLOC	MLOC_55521.4	756	7e-23	700 - 756	100	57 / 57	plus	ABC01920 ABC43138
MLOC	MLOC_55521.1	1641	7e-23	1585 - 1641	100	57 / 57	plus	ABC01920 ABC43138
JLOC1	JLOC1_35826.2	3474	8e-25	1115 - 1174	100	60 / 60	plus
JLOC1	JLOC1_35826.1	4045	8e-25	1686 - 1745	100	60 / 60	plus
JLOC1	JLOC1_35827.1	6392	8e-25	2442 - 2501	100	60 / 60	minus
Harvest21	ABC01920	796	3e-25	700 - 759	100	60 / 60	plus	ABC01920
Harvest35	U35_16457	791	3e-25	700 - 759	100	60 / 60	plus

Contig Sequence (791 bp)

>U35_16457 791 Hv_44K_v2
GCGGGGGCGCTGTCCAAAGCGCGTGATCCATTTCCTCCGTCCTCGCTCGGTGCGCGCGCC
ACTCCGCCGGCCCGTCCCCCTCGCCGGCGACTTCTCGCCCTCCTCGCGGCCGCCCCCAGG
CAGGCAGAGCGTGTTGCGACTTGCGAGCCATGGCCGGCGACAAGAAGGTGTTCGGCTTCG
AGGAGGTCGCCAAGCACAACGTCACCAAGGACTGCTGGCTCGTCATCGCCGGCAAGGTGT
ATGATGTCACCCCTTTCATGGATGAGCATCCTGGTGGAGATGAGGTGCTGCTGGCAGTAA
CCGGGAAAGATGCAACCAGCGACTTTGAAGATATCGGACACAGTGATTCCGCAAGGGAGA
TGATGGAGAAGTACCACATCGGAGAGATTGATGCTTCAACCATCCCAGCAAAGCGTACAT
TTGTACCTCCTCAACAAGGGTCCCATGTCCAGGCCAAGGATAATGACATCCTCATCAAGA
TCCTGCAGTTCCTTGTTCCCATTTTTATATTGGGTCTTGCATTTGGTATCCGGCACTACA
GCAAATCTGAGTAGGCTGTTGGTGGCGAGTTGCTTCTGAGAAATAGCTTTCAAGTAACAT
GGTTTGAATTAGAACAACATAATAATGGTATTGGTTGGCTGGTTTCATTTGGTGGCAGTG
TGTTGTCTTATTGATCATACAAGGCACTCTGAATTCCAAACGTCCATATGTATGCCCAGA
TTACTCCAATTATGTTTACATTCTCAACATATGGAGTTTCTACATTAAAAAAAAAAAAAA
AAAAAAAAAAA

Homology of Contig U35_16457 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g37420.2	135	1e-72	protein\|cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
Brachypodium v1_2	Bradi3g30890.3	135	1e-86
Arabidopsis v10	AT5G53560.1	134	1e-65	\| Symbols: ATB5-A, B5 #2, ATCB5-E, CB5-E \| cytochrome B5 isoform E \| chr5:21759628-21760353 FORWARD LENGTH=134