barSeed - Barley Seed Development Database

Probe CUST_21925_PI390587928

Source Contig U35_42722

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21925_PI390587928	Hv_44K_v2	TTTGTAAGGTCCTCGAGAATAATCAATAAAATGGCCGCATGCATCTCCCAGATGCAGAGG	438	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375180	1110	7e-23	1029 - 1088	98	59 / 60	plus	ABC17399 ABC23222
MLOC	MLOC_70976.1	114	7e-23	21 - 80	98	59 / 60	minus	None
JLOC1	JLOC1_5627.1	245	8e-25	13 - 72	100	60 / 60	minus
Harvest21	ABC23222	556	3e-25	458 - 517	100	60 / 60	plus	ABC23222
Harvest35	U35_42722	537	3e-25	439 - 498	100	60 / 60	plus

Contig Sequence (537 bp)

>U35_42722 537 Hv_44K_v2
GCTCACGGCGCCGTTCCCTTCTTGAAGGCGCCGCTTTGGAACCTTGGGGCTGGGTGGCGC
TTGTGGGTGGTGGGCGACGGCGATGGTGCGACCCTATCCTAGCATGGATCTCCGTCCTGC
TTGGAGATGGACTCGCGTAGGTGGAGGTCGTCGTTTGGCGTCATGATGGCGTCGATGGCG
GAGGCACCTGCCAAGGCTGGTACCTCAATCTGATCTGAAGATGGACCAGTGGAAGATGGC
GGCGACGACACATGTAAGTGCGTCGGACCGGTTTGTACCCCGGACCCGGTATGTGGCTCG
GTCAAGGTCTCCGGCTTTAGATGTTAGGTTTAGGTGAGAGGTCTGGGTATTTGGTCCAGC
TTGCACCCCTTCATCATATGGATAGGAATAGCGGTAGATGTTGTCAAGATGGTGGATTCA
GGCATATTGTTGTACTGCTTTGTAAGGTCCTCGAGAATAATCAATAAAATGGCCGCATGC
ATCTCCCAGATGCAGAGGCCGGGGGTCATCCTCCTTTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_42722 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None