barSeed - Barley Seed Development Database

Probe ABC17399

Source Contig ABC17399

barSeed

Links

Affymetrix Source Sequence (670 bp)

>ABC17399 670
ACGACGAATTTGATATTCTTTCTTACTGTAGAGATAACAAGATAGAACTTGATCACATTG
TTGGATGCATACCACAGAAAATCTGCCTCATGCGGTGTTAAAAATATACTGGTTCTCAAC
ATGTTACTAGGATTTAGTTGTACAAAAAGATTTTTGTGCATGACGACAACATGGAGTTCT
CAAATAATGTGTTGATTCCTTGGCACCGCATAAGTGTTTTCAAGCTTATTCCAGGAGATA
CACTTGCATCTTTCATCTATGTGCCTTGTGAAGTTATGAAACAACAAATGCATGTCCAAG
GCTCCATCAAATCATGATCACGAGCATTAAGTGGTAGAGAAGGATACGAGTCACCTGTCA
AGGCTGACACCTCAATCTGCTCTGAAGATGAATCGGTGGAAGATGGTGGCGGTGACACAT
GTGAGTGCGTCGGACCGCTTTGTGCCCCGGACCCGGTATGTGGCTCGTTCGGGACGTCTG
GCTTTAGATGTTGGCTTAGGTAAGAGGTGTGGGTATTTGGCCCAGCTTGCACCCCTTCAT
CATATAGATAGGAGTAGCGGCAGATGTTGCCAAGATAGCGGATTCAGGCATATTGTTGTA
TTACTTTGTAAGGTCATCAGGAATAATCAATAAAATGGTCGCATGCATTTCCTAAAAAAA
AAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK375180	1110	1e-96	771 - 1080	87	272 / 311	CUST_21925_PI390587928	ABC17399 ABC23222
MLOC_3371.5	1845	4e-91	131 - 312	100	182 / 182	None	ABC17399
MLOC_3371.1	2658	4e-91	134 - 315	100	182 / 182	None	ABC17399
MLOC_3371.11	1887	4e-91	79 - 260	100	182 / 182	None	ABC17399
MLOC_3371.9	1962	4e-91	118 - 299	100	182 / 182	None	ABC17399
MLOC_45309.1	238	3e-72	67 - 236	96	163 / 170	None	ABC17399