barSeed - Barley Seed Development Database

Probe CUST_21892_PI390587928

Source Contig U35_23676

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21892_PI390587928	Hv_44K_v2	CGAGTGACCGTATTGTGCTTCGGCCTTAACTTTAATGATTGTTAGTGTATTTTCTTTTTT	609	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376766	1080	9e-22	1000 - 1061	97	60 / 62	plus	ABC18779
Harvest21	ABC18779	706	3e-25	610 - 669	100	60 / 60	plus	ABC18779
Harvest35	U35_23676	706	3e-25	610 - 669	100	60 / 60	plus

Contig Sequence (706 bp)

>U35_23676 706 Hv_44K_v2
CGCCACTCCCTCGACTCCTTCGGCCTCACCCCGCAGCCATGAATCCGGCTCGTCTGTTCC
CAACCCCAGTGGACCCCGGTGTGCTCCTTCGCCGCGCGCACGAGCTCAAGGAGGATGGAA
AACCGCCTGTTCTAGTCGCGCGACTACGCCGGCGCGCTGCGGCAGTACGAGCTCGCCCTC
CGCCTTGCCCCGCGTGGCCATCCCTCGCGCTCCAGGCCGTGCCCGCGCGCTTGAGGCACT
CGGCCGCCACGAGGCTAGGTGGGGCTGCGTGCGGACGGTGCTCCAGGCATTGGCGCGGTG
CGGTTGGCGGCAGCGGAGCGCACGAGGCAGCGAGGTCGCTGGAGGGTGCGGCGGCGAGGT
CGCCAGGCGGAGTAGAGGGACCACGAGGCGGCGAGGTCGCCAGGCGCACGAGGCAGCGAG
GCAGTGGCAGCGCGGGGTGGCCAGGAGTCCGAGTGGCCGGCGACGGACAGAACAATTTGA
GGGGCTTTTTGAAAATTTCCAACGATGTTTGACCGGTCAACTCAACAGAATACGGAGCTA
TACGACGAGGAGTGACCGTATAAGCACCACAACTCGTATTCAATGACTGTATTGAGCGTA
TTTTGAAGTCGAGTGACCGTATTGTGCTTCGGCCTTAACTTTAATGATTGTTAGTGTATT
TTCTTTTTTTGAAAGGTGTTAGCTTTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_23676 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None