barSeed - Barley Seed Development Database

Probe CUST_21857_PI390587928

Source Contig U35_47643

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21857_PI390587928	Hv_44K_v2	GATAGTTTAACCATTGCTATATTTCTGACTGCATTCAGGAGTTTAGAGATACTCATGGAA	496	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45983.3	1235	2e-24	974 - 1033	100	60 / 60	plus	ABC09148
MLOC	MLOC_45983.4	1108	2e-24	847 - 906	100	60 / 60	plus	ABC09148
JLOC1	JLOC1_29811.5	720	8e-25	460 - 519	100	60 / 60	plus
JLOC1	JLOC1_29811.3	1107	8e-25	847 - 906	100	60 / 60	plus
JLOC1	JLOC1_29811.1	700	8e-25	440 - 499	100	60 / 60	plus
Harvest21	ABC48871	725	3e-25	497 - 556	100	60 / 60	plus
Harvest35	U35_47643	725	3e-25	497 - 556	100	60 / 60	plus

Contig Sequence (725 bp)

>U35_47643 725 Hv_44K_v2
GAAACATAACTCTGATCTCTTGTTTGTCGAGTGACTCTGGCCGATGCCTCAAATAGGTTT
CATCCTTCAAATAGTTCTCCCAGCATCTCCTCTAAAACCTCGGGACTAATGCTTCCGCAG
CTAAGCTATTCAGCTAGTTCTGGTTGCTCCTTCAGGTAGTCACGGTAACCTGAAATAACT
CTCTCGATGATTGCTCTCCGCAGCGCATCTCTGAGCAGGGGGTTTGGAACCTTTGAATGG
TCATGTCCTGGCAGGCTCTGCAAAAGGTATGTTTTTTTGTAACAACTGTGGATGAGAATT
AGCGATATTTTAGATTGGCCGGTGGATAGGCCAGGCCAGCATTTCCTTTCGGATGTAAGA
AAGGGAGTAACCTCACTCACTCTAAAAGTATTTGGTTCTACTAGGGCAAGTTGAAGGGCA
GTCGTAGTAATCATGTAGTCGAGTCGGTGTGCCAGACCAGCAGTTTGTGTCCCCAATTCT
CTGTTATGGGATTTGAGATAGTTTAACCATTGCTATATTTCTGACTGCATTCAGGAGTTT
AGAGATACTCATGGAATTGTTATTATTTTGTTGCAGGTGGCCCTCAAGCTACATGTATCG
GGCAAAGAGCAGCTGTAGCCAAAGGACATGAATCTGAAACTGGACGCAAGAAGCAACTTG
CAGCACAAAATGGCACTAACGAATCACAGNCACGGCGAGTTCCGGTTAATCCCTGAAGCA
GTAGT

Homology of Contig U35_47643 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None