barSeed - Barley Seed Development Database

Probe CUST_21837_PI390587928

Source Contig U35_47651

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21837_PI390587928	Hv_44K_v2	CGAATGATTGGAATGACCAGTAATCTCTCGTTGATGAAAACTGAGATATTTATACCCAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361581	941	9e-22	868 - 925	98	57 / 58	plus	ABC20228 ABC48891
JLOC1	JLOC1_5835.2	1311	5e-22	986 - 1043	98	57 / 58	plus
JLOC1	JLOC1_5835.1	1115	5e-22	790 - 847	98	57 / 58	plus
Harvest21	ABC48891	516	3e-25	15 - 74	100	60 / 60	minus	ABC48891
Harvest35	U35_47651	516	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (516 bp)

>U35_47651 516 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGGTATAAATATCTCAGTTTTCATCAACGAGAGATTACTGGTC
ATTCCAATCATTCGCTTTCCCTCTCTCGTTTATTCTTAACACGTCATCAGCACGCTCTTT
CCTGAGCGACCAGGCGAAAGAATCGGAAACGACGACGGATAGTAGGCAGTTTCCCCACCG
TTCGTGGAGGCGCAGCAACGACTATTATTCCCAACGAGGTTCCAGGCGCCCTGCATCCCA
GAGCGGCCCTCGGCTTGGAGCATGGCCGATCTCCTCATAGACATGCTGAATCATTGGAGT
GCTTGTTTTCATCGTTGCCCATCGGAGACGGCAACCCATCCCAACGGAGCGCTCAACGAA
CAAGCGGCCTCGCCTGCTTCCATCAGCGAGGCGTCTCATCGGCGTCCAATGGCCGAGCCA
AGGTCCTCGGCTTTGCCCTCCGGCGCCGGAACGACGAGCACGAGGCGCGGNCGCTCCTCC
CGGCACGCCTTGCGCCCCGCGCTCGGCCATCGGCCT

Homology of Contig U35_47651 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None