barSeed - Barley Seed Development Database

Probe CUST_21760_PI390587928

Source Contig U35_44690

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21760_PI390587928	Hv_44K_v2	TGTGGCAGCAGTTCGAGACGCAGTACCCGGGGTCCAACGTGCTGCTCGTCACCGTCACCG	82	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78452.1	2007	2e-24	691 - 750	100	60 / 60	minus	ABC03212 ABC03213 ABC06513 ABC06514 ABC19426
MLOC	MLOC_78452.2	1911	2e-24	619 - 678	100	60 / 60	minus	ABC03212 ABC03213 ABC06513 ABC06514 ABC19426
JLOC1	JLOC1_52286.1	2463	8e-25	1220 - 1279	100	60 / 60	plus
Harvest21	ABC42712	142	3e-25	83 - 142	100	60 / 60	plus
Harvest21	ABC06510	886	3e-25	247 - 306	100	60 / 60	plus
Harvest35	U35_44690	142	3e-25	83 - 142	100	60 / 60	plus
Harvest35	U35_2855	1706	3e-25	1067 - 1126	100	60 / 60	plus

Contig Sequence (142 bp)

>U35_44690 142 Hv_44K_v2
CTTCCTCAGTTCCCCAATAGTTCTGGCCGGAGGCCCCGGCAGGGATTCTTCCTCNCGCCA
CGGCCGGAGAGCTACTTCCCGGTGTGGCAGCAGTTCGAGACGCAGTACCCGGGGTCCAAC
GTGCTGCTCGTCACCGTCACCG

Homology of Contig U35_44690 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None