barSeed - Barley Seed Development Database

Probe CUST_21745_PI390587928

Source Contig U35_3606

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21745_PI390587928	Hv_44K_v2	TTGTATCGAAGCTCTAGCTAGTCACGTCGTATCGCATCGAAGCCGAAGAAGCAATTAATG	34	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1826.2	1370	2e-24	1140 - 1199	100	60 / 60	minus	ABC17982 ABC42758
JLOC1	JLOC1_1106.1	1342	8e-25	64 - 123	100	60 / 60	plus
Harvest21	ABC16175	674	3e-25	21 - 80	100	60 / 60	plus
Harvest35	U35_3606	689	3e-25	35 - 94	100	60 / 60	plus

Contig Sequence (689 bp)

>U35_3606 689 Hv_44K_v2
ATCGCCTCATCGAGCTCGGCTCACATCACAAGAGTTGTATCGAAGCTCTAGCTAGTCACG
TCGTATCGCATCGAAGCCGAAGAAGCAATTAATGGCCGCCTTCACCACCAGGCCGGCGGC
CTTCCTCGGCCTCGCCGTCGTGCTCTGTGCCCTCGCCGGCCCGGCGACCGCGCAGCGGCT
CTCGCCCAACTTCTACTCGAGGTCCTGCCCCAACCTGGCGTCCATCGTGCGGTCGGGGAT
GACCTCGGCGTTGCAGACGGAGAGGCGGATGGGCGCGTCCATCCTTCGCCTCTTCTTCCA
CGACTGCTTCGTCAATGGGTGTGACGGCTCCATTCTGCTGGACGACACGTCGACGCTCAC
CGGCGAGAAGAACGCCGGGCCGAACGCCAACTCGGCCCGCGGGTTCGACGTGATCGACGC
CATCAAGACCAGGGTCGAGGCTGCGTGCAGGGCCACCGTCTCCTGCGCCGACATCCTGGC
GCTCGCCGCCCGCGACGGAGTCAACCTGCTGGGAGGTCCGACGTGGAGCGTGCCGCTGGG
GCGCAAGGACGCGCGCACGGCGAGCCAGAGCGCGGCGAACGCGAACCTCCCGGGGCCCGG
CTCCAGCCTCGCCACGCTCATCGCCATGTTCGGCAACAAGAACCTGTCGCCGCGGGACAT
GACGGCGCTCTCCGGCGCGCACACCATCG

Homology of Contig U35_3606 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35520.1	364	3e-104	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g38290.1	320	8e-106
Arabidopsis v10	AT5G05340.1	324	1e-77	Peroxidase superfamily protein \| chr5:1579142-1580819 REVERSE LENGTH=324