barSeed - Barley Seed Development Database

Probe CUST_21738_PI390587928

Source Contig U35_3613

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21738_PI390587928	Hv_44K_v2	CATGCTTTGCGTAATTCAGTTGTAGATTGCTATTCTACCAGTTCTCTATGAAGGTGATTA	1082	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.867	1.947	1.408	0.781	0.233	0.262
Raw	440.884	754.511	455.951	407.172	42.411	51.728

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_28251.2	1087	2e-24	905 - 964	100	60 / 60	plus	ABC08865
JLOC1	JLOC1_18976.1	924	8e-25	805 - 864	100	60 / 60	plus
Harvest21	ABC08865	1088	3e-25	991 - 1050	100	60 / 60	plus	ABC08865
Harvest35	U35_3613	1152	3e-25	1083 - 1142	100	60 / 60	plus

Contig Sequence (1152 bp)

>U35_3613 1152 Hv_44K_v2
CCACCCACCCTGCCCCTCACGACGCCGACAACGAGATGTAGAAGGATGTGAGGTGGTGGC
GACGGTCGCATCGCTCCCTTAGCGGCCGGCGAATCAGCCGTGGCGGTGGTGGTAGGGTTA
CAGCCCGACGAGATGGCGACGACATGTTGCTTCCTCCGACTGTAGACACGAGATCGAAGC
CTCGGATGCGACCGGGTGCGAACTGCAACTGTAGCGGAGCTCGGAGGCGACCCGGAGATG
AATTGCGTATGTGCGAGCTCGGTGGCAACCACGAGACCTCACTTCGGGCGTTCCTCCACT
CGGGAGAAAGCTTTGGTGAATGAGTGCTTTAACGTCATAATTATGAAACCCTCATGCACC
CAACAGGTTTGTTACTTCAACCAAGTGATAGAGGAAGGAAGAAGCAAGTTGCAGGGTTGG
TCATTCACAAACACCCCTGCCTCAAGTACTCACCGTCAAGCATGGACCATGCTCGTTGGG
AGATCACGCTCACACCAATTCACCACGGAGGTCACATGAGTTTATCATCAACCTGCCAGC
CTCGCCTTCATCACCCGGAGAAAACCCTACAACACCTCGAGGAACACCGAGTGGTGCTAA
AGATATTGCCTCCAATGCAAGCATTAAACAAGTTAAATATCAACAGAGACAAAGCCGTGA
TAAGGCAAGGAGAAATAGCCTAACACCCGAGCAAAGAGCAGAAATAAATGCACGTCGAAG
AGCATCTAGACAAAATAAGACTATAGAAGATAGGAATGCAAGCAAAAGGGCTGCGAGTGA
AAATCTGACAACAAAGAAGAGGCAAGAGATGAATGCCTGTAGAAGGGAAGCAAGTAAAAA
TATATCAGCTGAGCAGAGGCAAGAGATGAACGCCCGTCGAAGAGCACGCACGCAGAGCAT
ACCACCAGATGAGAGGAAGGCATTGCGGGCTCAACGAAAGGCATACCTTGCAGCTAAGCG
AAAGACCACATGCGCTGAATGCATCGCAATGCCTTGCCCAGATGCATATCTCTAATGAAT
CACCATGTTCTATTACTGAAGTTTGCATGTGTCCAATCTATATTTGTCAGTCAATTGTTA
ATCATGCTTTGCGTAATTCAGTTGTAGATTGCTATTCTACCAGTTCTCTATGAAGGTGAT
TATTAAATTAAA

Homology of Contig U35_3613 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None