barSeed - Barley Seed Development Database

Probe CUST_21643_PI390587928

Source Contig U35_42876

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21643_PI390587928	Hv_44K_v2	TTTTACTGGGAAATGTAATCCCCCTCAAGCTTGGTTATGTAGGTATCGTGAATCGCAGCC	390	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372371	2937	2e-24	759 - 818	100	60 / 60	plus	ABC10920 ABC14605
MLOC	MLOC_21116.1	729	2e-24	129 - 188	100	60 / 60	minus	None
MLOC	MLOC_21116.2	540	2e-24	126 - 185	100	60 / 60	minus	None
JLOC1	JLOC1_14649.1	649	8e-25	356 - 415	100	60 / 60	plus
Harvest21	ABC38842	473	3e-25	391 - 450	100	60 / 60	plus
Harvest35	U35_42876	473	3e-25	391 - 450	100	60 / 60	plus

Contig Sequence (473 bp)

>U35_42876 473 Hv_44K_v2
GGCCGATTCGACGATTTCGAACACATAAGCGCGAGATCCAGTCGGAAACAGACAAAGAAG
CTGGAGGTAACAAAGGTGTCTCTGACAAACAGATTCGTCTGAAAATCTTCTCGCCAAATG
TAATTGACATCACCTTGGTTGACCTCCCTGGAATTACAAGGGTTCCGGTTGGAGATCAGC
CTAGTGATATTGAGTCAAGAATAAGAACAATGATCATGCAATACATCAAGCATCCAAGCT
GCATTATCTTGGCCGTCTCACCTGCAAATGCTGATTTAGCTAATTCTGACGCTCTTCAAC
TGGCACGGCTTGGTGATCCTGATGGATCTCGTACAATTGGTGTTATCACCAAGCTGGACA
TCATGGACAGGGGTACTGATGCTCGTAACTTTTTACTGGGAAATGTAATCCCCCTCAAGC
TTGGTTATGTAGGTATCGTGAATCGCAGCCAAGAGGACATCAACTNTAACCGA

Homology of Contig U35_42876 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g31190.1	798	6e-89	protein\|dynamin family protein, putative, expressed
Brachypodium v1_2	Bradi5g07690.1	773	1e-91
Arabidopsis v10	AT2G14120.3	809	3e-73	\| Symbols: DRP3B \| dynamin related protein \| chr2:5954253-5960015 REVERSE LENGTH=809