barSeed - Barley Seed Development Database

Probe CUST_21484_PI390587928

Source Contig U35_5428

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21484_PI390587928	Hv_44K_v2	TATTGAGTATAGGCAGTATAATTATGTAAGAGTCGCAGCTACCATGTGACACATGTATCC	1145	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366818	2066	3e-21	2007 - 2066	97	58 / 60	plus	ABC11274
MLOC	MLOC_66022.1	972	3e-21	730 - 789	97	58 / 60	plus	ABC11274
JLOC1	JLOC1_43490.1	905	2e-21	714 - 773	97	58 / 60	plus
Harvest21	ABC11274	1254	3e-25	1146 - 1205	100	60 / 60	plus	ABC11274
Harvest35	U35_5428	1254	3e-25	1146 - 1205	100	60 / 60	plus

Contig Sequence (1254 bp)

>U35_5428 1254 Hv_44K_v2
GGAAATGGTTAGATGGCTTAAAGAACATAATAACATAAACATCTTTGTAGAGCCACGAGT
TAGCAAGGAATTACTGATTGAAGATTCTTACTTCAACTTTATTCAGACATGGGATAATGA
TCAGGAAATGAAGACATTACACACGAAGGTTGACCTCATTGTAACTCTCGGCGGTGATGG
AACTGTTCTGTGGGCTGCATCATTGTTCAAAGGACCAGTTCCCCCAGTGGTTGCATTCTC
TCTTGGATCATTGGGCTTCATGACTCCCTTCCCAAGTGAGCAGTATCGTGAATGCTTGGG
CAATGTGCTGAAAAGACCATTTACCATCACACTGAGGAGCCGCCTGCAGTGTCATGTAAT
TCGTGATGCAGCTAAGGATGAAGTTGAGACCGGGGAACCGATTCTAGTGCTTAATGAAGT
TACAATTGACCGCGGGATGTCATCGTACCTTACCTACTTAGAATGCTATTGTGATAGTTC
TTTTGTTACATGCGTACAAGGAGATGGGCTAATACTATCAACAACATCTGGAAGCACAGC
GTATTCACTGGCAGCTGGAGGATCAATGGTACATCCACAGGTCCCGGGGATCCTTTTCAC
ACCGATCTGCCCTCACTCATTGTCATTCCGGCCTTTGATACTGCCGGAATACGTGACTTT
GCGCGTGCAAGTACCGTTCAACAGCAGAGGGCAAGCCTGGGCGTCCTTCGACGGCAAGGG
TAGGATTCAGCTAGGACCAGGCGACGCCCTCATCTGCAGTGTCTCTCCTTGGCCCGTGCC
CACGGCATGCCTGGTGGACTCGACAACCGACTTCCTGCGAAGCATCCACGAGGGCCTCCA
CTGGAACCTCAGGAAGAGCCAGGCTCTGGATGGTCCTGCCTGATCGATGAAGTTTGCGTG
TCATTGGAACTCGAGATGGCGGATGAGTCGGTAGATGCGATATTTCAGAGCATCTCCTCA
CAGCCCAGCGAAAATGAAGTGGATATGCATCATGCATGCTCCTGTGTTGGTTCGGTTCTT
TATGGGTCTTTGAATATTCTTCTACTATTCCGTACGCATAAAAGGGTTTATTGATATGTT
TATTAGGTGTCGGCTCGTGGAATTCGAACTTGGTCAGTTTGCCACCATGTGAATATCTAG
AGTTTTATTGAGTATAGGCAGTATAATTATGTAAGAGTCGCAGCTACCATGTGACACATG
TATCCAAAAAAAATCAAAAAAAAAAAGTAAGAGTCGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5428 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g32210.1	495	0.0	protein\|NAD kinase, putative, expressed
Brachypodium v1_2	Bradi2g26930.1	549	0.0
Arabidopsis v10	AT3G21070.1	530	1e-162	\| Symbols: NADK1, ATNADK-1 \| NAD kinase 1 \| chr3:7380434-7383874 REVERSE LENGTH=530