barSeed - Barley Seed Development Database

Probe CUST_21475_PI390587928

Source Contig U35_5437

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21475_PI390587928	Hv_44K_v2	GGCGATATAACTTTGTTCCGATCAATGGAGAAATGCAGTTCATGATGAGCTTTCCTCTAA	888	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.350	1.575	1.180	0.848	0.376	0.372
Raw	1203.630	2225.323	1451.843	1647.255	254.180	276.245

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53532.1	2715	6e-24	1450 - 1508	100	59 / 59	minus	ABC13470
MLOC	MLOC_53533.1	5124	6e-24	1433 - 1491	100	59 / 59	minus	ABC13470
JLOC1	JLOC1_34404.1	4533	3e-24	3532 - 3590	100	59 / 59	plus
Harvest21	ABC13470	963	3e-25	16 - 75	100	60 / 60	minus	ABC13470
Harvest35	U35_5437	963	3e-25	889 - 948	100	60 / 60	plus

Contig Sequence (963 bp)

>U35_5437 963 Hv_44K_v2
GCTCAATTTCTCCATTGCATATGGAAAAACAGCTGCTGGGCTTGCTCGGGATTGGAAGGT
ATCACGTAGGGAAGCAGAGGATACACTGGATCTCTGGTACAGTGACAGAAAAGAAGTTTT
GGCATGGCAGACGGAACAGAAAGAATTAGCATATGAGAAGTCTGAAGTTTATACTTTGCT
TGGACGCTCTCGCCGTTTCCCCAGCATTTCTTCTGTAACCTCCAAAACATGGAAGCACAT
CGAGCGTGCTGCTATCAATGCCCCTGTACAGGGCAGTGCAGCAGATGTTGCCATGTGTGC
AATGATTGAGATAGAAAGGAACACTCGTCTTAAGGAGCTCGGTTGGACCCTCCTGTTGCA
GGTGCATGATGAAGTGATACTCGAAGGACCTTCCGAGTCGGCTGACGTGGCCAAGGCAAT
AGTGGTTGAGTGCATGTCTAAGCCCTTCTACGGCACCAACATCCTGTCGGTCGACCTGGC
TGTTGATGCGAAATGTGCACAGAACTGGTTTGCGGCCAAGTAGACTCCGAGCATCATCAC
CCCCTCCGCCGACTCCCCAACAAGGCGTAGGTGCGCCCCAGATGCGCACATACTCCAGCC
AATTTTGGTCCGTCCTGAGCTGGTGTTAACTGCTGCATAATAGCACAGGGCATGCATAAG
GCTCATCCTGCCATGGCAGCAGAAAAGTGAGATTAGCAGCGAAGGCATTGTACACTACCA
TTTAGGCTGGATAGCTGGACTCCACACCCTTCCTAGTAGGCACTCTGAATCGAGCTAGAG
GGATTGTAGTTAAGATTGGCATGCATTTTGTGTATAAGATTGCTGCAGTGTGCTAATGTA
TTAGGTTAGATAACATATTCCCTGATGTGGACACGATCATGGGCTCATGGCGATATAACT
TTGTTCCGATCAATGGAGAAATGCAGTTCATGATGAGCTTTCCTCTAAAAAAAAAAAAAA
AAA

Homology of Contig U35_5437 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g54500.1	692	3e-91	protein\|POLGAMMA2, putative, expressed
Brachypodium v1_2	Bradi5g23367.1	1032	2e-90
Arabidopsis v10	AT3G20540.2	1049	6e-75	\| Symbols: POLGAMMA1 \| polymerase gamma 1 \| chr3:7168261-7173357 FORWARD LENGTH=1049