barSeed - Barley Seed Development Database

Probe CUST_21435_PI390587928

Source Contig U35_4183

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21435_PI390587928	Hv_44K_v2	ATCTAGGTTTAGTTTGCTGCTGGATCTTGGATTTGCCGGAGCTACGTAGTACATAGCTAG	242	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376388	1574	2e-24	251 - 310	100	60 / 60	plus	ABC13556 ABC13717 ABC24499
MLOC	MLOC_38800.1	670	2e-24	167 - 226	100	60 / 60	minus	None
JLOC1	JLOC1_25259.1	1881	8e-25	1440 - 1499	100	60 / 60	minus
Harvest21	ABC09070	633	3e-25	243 - 302	100	60 / 60	plus
Harvest35	U35_4183	633	3e-25	243 - 302	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_4183 633 Hv_44K_v2
GCACAAGGCACAGCCCACCAGCTTCCCTGCCTTCTCCATATCCCCCCTCTTCCTTCTCCA
TAGCTTCTCTTCTCCTATCCAGCATCGATCCACCCCCACCCTCTTCCCCATCTCCATGCT
CTTCCTAATCGATCGCTGAATCCGCATCTTCTTATAGCTAGCTAGCCAATCACCCTTTAA
CCCGTCGACAAATAACGAAACGAGAACACAGCGCGTGTGTAGCAGGTGTAGACCATCGTC
GTATCTAGGTTTAGTTTGCTGCTGGATCTTGGATTTGCCGGAGCTACGTAGTACATAGCT
AGCAGCTGACTGCTTGATCGACCGGGAAGCCCAGGCGATCGATGATGGCAGGAGCAGCTC
ATCCGATGCATTTCTGCATGGACTCTGACTGGCTCAAGGGCATCGTCCCCGAGGACCAGG
GTGGGATGGGGTCGTCGTCGCCGTCAGAGGAGCTGATCATCGCGTGCCCGGAGCCGATGC
AGGCTCAGCAGGCGGCGGACCGGCGGCTGCGCCCGCAGCACGACCAGCCGCTCAAGTGCC
CGCGCTGCGACTCCACGCACACCAAGTTCTGCTACTACAACAACTACAGCCTCTCCCAGC
CGCGCTACTTCTGCAAGACGTGCCGCCGCTACT

Homology of Contig U35_4183 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g52880.1	319	3e-55
Arabidopsis v10	None