barSeed - Barley Seed Development Database

Probe CUST_21427_PI390587928

Source Contig U35_4191

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21427_PI390587928	Hv_44K_v2	ACAAATCAATGTATTTCCGTTATGCATTTAATGGAAAGGGGAGAAGCCCAGTTCAAAAAA	561	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361805	2242	2e-24	579 - 638	100	60 / 60	plus	ABC09843 ABC09844 ABC13294 ABC18182 ABC45672
MLOC	AK368586	851	2e-24	579 - 638	100	60 / 60	plus	ABC09843 ABC09844 ABC18182
MLOC	MLOC_45745.1	1123	2e-24	755 - 814	100	60 / 60	minus	ABC09844
JLOC1	JLOC1_29677.1	695	8e-25	327 - 386	100	60 / 60	minus
Harvest21	ABC09844	632	3e-25	562 - 621	100	60 / 60	plus	ABC09844
Harvest35	U35_4191	632	3e-25	562 - 621	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_4191 632 Hv_44K_v2
GCACGAGGCAGATCCATGGCGGCCGGAGGCGTGTGGGTGTTCCGGAAGGACGGGGTGATG
GAGCTGAAGAGCGCCGAGGTGCAGCCGTCGGCGGCGCCGGCGCCGAGCAAGAAGGCGCTG
GTGTACGTGCCGGCGAACGAGATGATGCGGTCGCTGGAGGCGCTGGAGCAGCGGCTGGGG
TCGCTGGGCTGGGAGCGCTACTACGAGAACCGAGACATCGTGCAGCTCCACCGGCGCGAC
GGCGGCGTCGACCTCATCGCCCTCCCGCGAGACTTTGCCAGGTTCCGGTCCACACACATG
TACGACGTCGTCGTCAAGAACAGGCACCACTTCAAGGTCGTCGACATCTAGACATGCATC
TTTCTGGTTCATGTTTTGGTCGAATCTGATTGCGGTACTGGATGTTGCTCTATCCTCCTT
AGAGTCGTGGCGGGGTTTTGGATGATGCTAGGTTTTCGCCTCATACCCTTGTATTCCTGA
TGACAGGCGCAAGGCGGTGGGTTTCCTAGCATTGCTCTGAGCTCGCTTCTCTCTCTTTCC
CTTTTTCTCTTTGGTCTCGGAACAAATCAATGTATTTCCGTTATGCATTTAATGGAAAGG
GGAGAAGCCCAGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4191 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None