barSeed - Barley Seed Development Database

Probe CUST_21419_PI390587928

Source Contig U35_4199

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21419_PI390587928	Hv_44K_v2	GCAGAAATAATTAATCCAAGGCTCGATTGAAATTGCAAGGGGATTTCCACTGCTAAAAAA	613	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.899	4.999	1.298	0.793	0.258	0.480
Raw	119.493	253.742	55.684	53.502	5.281	12.272

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9099.1	1444	9e-22	579 - 633	100	55 / 55	minus	ABC14331 ABC16608
JLOC1	JLOC1_5973.1	999	5e-22	157 - 211	100	55 / 55	minus
Harvest21	ABC16608	684	3e-25	617 - 676	100	60 / 60	plus	ABC16608
Harvest35	U35_4199	745	3e-25	614 - 673	100	60 / 60	plus

Contig Sequence (745 bp)

>U35_4199 745 Hv_44K_v2
GCCGTCCCCACCCCCGCCTACCTCCACGCAAGTAGCCGCGCCGCCCCCGGAGCGAGCCCC
GGAGGTCCTCGTCTCGCGGGCCGTGCCGGCGCAGGGGCACTACTTCATCCCACACCCGCA
GCACTTCATGCACGGGCATTTCCTGATGCCAGGCAGCCATGAGGCGGACGCCGCCGTCCC
GAGCAGCTCCAGCGGAAACAGCAACGGCCACAGCAATGGCCACAGCGGCGGGAACGGCGG
CGATGAGATGGCCATGGCGATGGCAGCGGCAGCGGAGGCGCACGCGGCGGGGTGCATGCT
GCCGCTCTCCGTGTTCAACTAGCGAGCTCCCCGGCCGCATCCATGGTTGCGATCCTAGCA
AATGCAATCGCAAGGTAGGTCTTAAGTAAGTTAATTCGGAGGTCTATATATCTAGCCGTA
ATCTCGATCGATCGCCGGATGAACCCCATCGATCGATCGATCACCGCGCGGACGCACTGT
TGTTGTCCTTACCCAACACTATTCACCCTTTTGGCTACATTTCTTGCTCGGAGCTAGTGG
TGCTCCTCCTCCTTGCTACTGTAGGGTTTCTACTTTCTAGCAGCGTTCGTGCACGCTTGG
TTGATTTGTGTATGCAGAAATAATTAATCCAAGGCTCGATTGAAATTGCAAGGGGATTTC
CACTGCTAAAAAAAAAAAAAAAATGTGTGCACTGCTGACCGATTGAGGCATGGTTTGATG
TATTTGTTGCAAAAAAAAAAAAAAA

Homology of Contig U35_4199 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None