barSeed - Barley Seed Development Database

Probe CUST_21408_PI390587928

Source Contig U35_21212

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21408_PI390587928	Hv_44K_v2	TTTTGGATTGTTGAGGAGCCCTCTTCTTCGTTTGCATGAAGAAGGCATCCACCCAGATTA	1291	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.683	0.772	1.966	2.562	0.889	0.842
Raw	40.360	75.982	159.865	337.774	41.458	41.715

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366302	2703	2e-24	1801 - 1860	100	60 / 60	plus	ABC11858 ABC11859
MLOC	MLOC_15606.2	2343	7e-23	1788 - 1847	98	59 / 60	plus	ABC11858 ABC11859
MLOC	MLOC_15606.1	2534	7e-23	2036 - 2095	98	59 / 60	plus	ABC11858 ABC11859
MLOC	MLOC_15606.3	2601	7e-23	1702 - 1761	98	59 / 60	plus	ABC11858 ABC11859
JLOC1	JLOC1_10715.3	2794	4e-23	1569 - 1628	98	59 / 60	plus
JLOC1	JLOC1_10715.2	3260	4e-23	2035 - 2094	98	59 / 60	plus
JLOC1	JLOC1_10715.1	2928	4e-23	1703 - 1762	98	59 / 60	plus
Harvest21	ABC15574	1362	3e-25	1292 - 1351	100	60 / 60	plus
Harvest35	U35_21212	1362	3e-25	1292 - 1351	100	60 / 60	plus

Contig Sequence (1362 bp)

>U35_21212 1362 Hv_44K_v2
GCAAGAGTGCACTTCTGGCAGCGCTAGAAGCTCTGGTTCCAGGCTCCCTGTTTGGGCTTA
TCACATTCAGCCACAAGATTGGGTTGTATGATGTACAAGGTCCAATGCCTGTTGTGAAAA
ATGTTTTCATCCCTCCAGACTCAGAAGAAGATGGACTGGCTGTCGCCCTTGAAGATGCCA
TGCCCCTACTTTCCTTTTTGGCCCCTGTTGATACATGCAAGGACAGAATTGCCGCTGCCC
TGGATACACTGCGGCCTACATCTTCATGGGAGAGAGGTGCTGCTTCTGGGCAGGAACCAG
ATACAGTTTTGCTTGGCGGGCGGGGTTTTGGAACAGCCATGTCTTCTCTAATTGACTACT
TGAGTTCAGAGTATGGTTCTACTTTTGCTTTGGCTAGGGTATTTGCTTTTCTCTCTGGTG
CTCCTGATTATGGAGATGGTCAACTAGACACTAGGAGATATGGTGAGCAATATGCTAGCA
AAGGGGAAGATGCTGACCTTGCGTTGCTCCCTGAGCAGATACCTTTCTACAGAGACCTGG
CAGCTGTTGCTGTTCAATCAGGAGTATGTGTAGACATATTTGCTGTAACGGATGAATACA
CCGATTTGGCTTCGTTGAAGTTTTTGAGTATCGAAAGTGGTGGCTCGTTATTTCTCTATG
CAAGTGCGGATGATTCAACACTTCCTCAGGACATATATCGCCTGTTGAGTCGACCCTATG
CATTTGGTTGTGTTCTAAGGCTGAGAACATCTCCAGATTTTGAGCCCGGACACTCTTATG
GCCATTTCTTCCCTGATCCTCAATATGAAAATGTGCAACATATTATCTGCTGTGATTCTT
TTGCTACTTATGCGTATGACTTTGACTTTACCCATGCCGATGGCTTCTCCAGGCACACAG
AACCTGCTGTTGTACAGATCGCTTTTCAGTACAGTGTCATTGAGCCTGTGGAGGAGGCAT
CAGGGAATGACTCACAATCATATCCAAGCTACAGGTTTTGTCTGAAGAGGCGGTTGAGGA
TAAAGACATTGCAGTATCGACCGGCTAATAATATCAATGAAATCTATGACAGTGTTGATC
AAGAGGCTGTCCTACATATCCTTGTTCATAAGGTCATTCTAGTTTCATTGGAAAATGGGG
TTAGGGAAGGCAGGCATTCGGTGCATGATTGGCTGGCTATCCTTATAACTCGGTATGATG
ATGCGTTGAGATCGGATCCACGAAATCCAGAATCACACATTGATATAGACTTCTCACAAT
GTCCACATCTGCAAACGATACCTCAGTTTGTTTTTGGATTGTTGAGGAGCCCTCTTCTTC
GTTTGCATGAAGAAGGCATCCACCCAGATTACCGGATATATC

Homology of Contig U35_21212 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g37120.1	748	protein\|sec23/Sec24 zinc finger family protein, expressed
Brachypodium v1_2	Bradi2g23950.1	747
Arabidopsis v10	AT2G27460.1	745	sec23/sec24 transport family protein \| chr2:11740670-11744867 FORWARD LENGTH=745