barSeed - Barley Seed Development Database

Probe CUST_21340_PI390587928

Source Contig U35_7363

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21340_PI390587928	Hv_44K_v2	ACCATGAAGAAGGCAGCAATGTATGGAATCGGAGCCACCACCATATTCTACATCTCTGTT	855	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67856.1	1706	2e-24	876 - 935	100	60 / 60	plus	ABC16611
MLOC	MLOC_67858.2	5289	2e-24	1299 - 1358	100	60 / 60	plus	ABC16611 ABC18956
MLOC	MLOC_67856.2	1681	2e-24	856 - 915	100	60 / 60	plus	ABC16611
MLOC	MLOC_67858.1	4868	2e-24	761 - 820	100	60 / 60	plus	ABC16611 ABC18956
JLOC1	JLOC1_44846.3	3836	8e-25	3750 - 3809	100	60 / 60	minus
JLOC1	JLOC1_44846.2	4001	8e-25	3915 - 3974	100	60 / 60	minus
JLOC1	JLOC1_44846.1	4151	8e-25	4065 - 4124	100	60 / 60	minus
JLOC1	JLOC1_44845.1	2388	8e-25	783 - 842	100	60 / 60	plus
Harvest21	ABC15568	966	3e-25	856 - 915	100	60 / 60	plus
Harvest35	U35_7363	967	3e-25	856 - 915	100	60 / 60	plus

Contig Sequence (967 bp)

>U35_7363 967 Hv_44K_v2
CTCCCACACCCCCACGCCACGCCACGCCACGCCACGCCTGACGCCTCGGCGGAGAAGATG
GACAAGCACGCCGCCGTCGCCGCCGCCGCCGCCGCCACAGCATCAGGGGAAGACGTCGAG
ACGGGCGAACACGAGCGCAAAGGGACGGTATGGACGGCGACGGCGCACATTGTGACGGCG
GTGATCGGCTCCGGCGTGCTGGCGCTGGCGTGGAGCGTGGCGCAGCTGGGATGGGTGGCA
GGGCCGCTCGCGCTGGTGGGCTTCGCGTGCGTCACCTACTACACCTCCACGCTGCTCGCC
AACGCCTACCGCGCGCCCGACCCCGTCACCGGCGCCAGGAACCACACCTACACGGACGCC
GTCCGATCATACCTCAGCCCCAGAGAGGTGTTCATGTGCGGGATCGCCCAGTACGGGAAC
CTGTGGGGCACCATGGTCGGCTACACCATCACCGCGACCATCAGCATGGTTGCGATCAGG
AGGTCGGACTGCGTCCACGAGAACGGCCAGGGCGCGCGCTGCGACGCGCCGGGGACCGTG
CTCATGCTGGCCTTCACCGTGGTCCAGGTGGTGCTGTCCCAGTTCCCCGGCCTGGAGCAC
ATCACGTGGCTGTCGATCGTGGCGGCGGTCATGTCGTTCGCCTACTCCTTCATCGGGCTG
GCGCTCTCGGTGACGGAGTGGGCGTCGCACGGCCTCCGACCCGACGGGAGGATAGCAGGC
GCTACCGCGGCGTCGTCCAGCAAGAAGACTTGGGACGTGCTCCTTGCCCTTGGGAACATT
GCCTTTGCTTACACTTTCGCAGAAGTGCTAATTGAGATCCAGGATACACTGAAGTCCCCA
CCATCTGAGCACAAGACCATGAAGAAGGCAGCAATGTATGGAATCGGAGCCACCACCATA
TTCTACATCTCTGTTGGCTGCGCCGGATACGCGGCATTTGGTTCAGATGCTCCCGGCAAC
ATACTGA

Homology of Contig U35_7363 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65660.1	466	6e-169	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi2g56760.1	464	9e-180
Arabidopsis v10	AT5G49630.1	481	2e-107	\| Symbols: AAP6 \| amino acid permease 6 \| chr5:20142681-20146441 REVERSE LENGTH=481