barSeed - Barley Seed Development Database

Probe CUST_21339_PI390587928

Source Contig U35_7364

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21339_PI390587928	Hv_44K_v2	GGTGACTTGATTCATTCATTCATTCATTGGTTCGGAGATTATGTATACACGTTAACTGAA	654	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376680	745	6e-24	677 - 735	100	59 / 59	plus	ABC20981 ABC21005
MLOC	MLOC_39539.1	734	6e-24	400 - 458	100	59 / 59	plus	ABC20981
JLOC1	JLOC1_25785.1	670	3e-24	395 - 453	100	59 / 59	plus
Harvest21	ABC20981	730	1e-23	655 - 715	98	60 / 61	plus	ABC20981
Harvest35	U35_7364	729	3e-25	655 - 714	100	60 / 60	plus
Harvest35	U35_35920	319	1e-24	182 - 240	100	59 / 59	plus

Contig Sequence (729 bp)

>U35_7364 729 Hv_44K_v2
GCACGACACGAACAGCCACCTTCGCTCCGAATCCACTGGTTTGGTTGATCAGCAGTCGAT
CCATCGCAGCTCGTATATAGTACCTCCATGACGAAGCACCAGAGAGCATCATCGGCGGAG
CAGCTCGTGTCTCTCTCCCTCTCGCTCTCGCTCGGCGCCGGCGCCGACCGGAGCACCAAG
AGGACGCGCCGCGCCGCCGCCGCCGGTGGGGAGTTCATGTGCAAGACGTGCGACCGCTCC
TTCCCGACGTTCCAGGCGCTCGGCGGCCACCGCACCAGCCACCTCCGCGGCCGCAACGGG
CTCGCGCTCGCACTCGCCGGGACGGGGCCGGAGCACAAGAAGGCCACGGACCAGAAGCAG
GCGCACCAGTGCCACGTCTGCGGGCAAGGGTTCGAGATGGGGCAGGCGCTCGGGGGCCAC
ATGCGCCGCCACCGCGAGCAGGAGGCCGCCGCCGCCGCGGTGGCGCAGCCGCCGCCCGTC
CTGCTCGAGCTGTTCGTCTAGGTTGATGATTAGCTAACTTTAGTTATGCTACAGAGTTCG
TGATCGACCTGTGTAGATTTGTACGTCGCTGCACACAGACACACATACTCGTAGCTTAGC
TAGGTATTGATCGTTAGTTGGTTCATTCATTCGTGTACTTTTGTGGACATATTTGGTGAC
TTGATTCATTCATTCATTCATTGGTTCGGAGATTATGTATACACGTTAACTGAAAAAAAA
AAAAAAAAA

Homology of Contig U35_7364 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None