barSeed - Barley Seed Development Database

Probe CUST_21249_PI390587928

Source Contig U35_12448

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21249_PI390587928	Hv_44K_v2	TTCGATCTCTTCCTCGCCATGCCTCCCTTCCACGATTGCCGCGATGGCGGTCTGCTTGTC	119	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372888	4425	2e-24	58 - 117	100	60 / 60	plus	ABC05490 ABC11222
MLOC	AK376879	3935	2e-24	61 - 120	100	60 / 60	plus	ABC05490
MLOC	AK362002	2706	2e-24	641 - 700	100	60 / 60	minus	ABC05490
MLOC	MLOC_49173.1	143	7e-23	73 - 132	98	59 / 60	plus	None
MLOC	MLOC_49619.1	372	3e-21	268 - 327	97	58 / 60	minus	None
Harvest35	U35_12448	329	3e-25	120 - 179	100	60 / 60	plus

Contig Sequence (329 bp)

>U35_12448 329 Hv_44K_v2
ACCACCACCCCACCTCCACCCCACCCCACCGCTCCTCCTCCTCCTCCCCCTATTTTTTCC
CTTCGACAGGGTTCGTTCGCTCGTTCGCTCGCTCTTCGATCCCTTCTTCGCAGCAGCTCT
TCGATCTCTTCCTCGCCATGCCTCCCTTCCACGATTGCCGCGATGGCGGTCTGCTTGTCC
TGGACCCGGCGGCGGCCGCGGCGGCTATGTTCGGCGGCGTGCGGCATCGGAAGCGCGCGC
GCGTCACGGCCGTGCACCCCCGCGTCTTCGCCGCTGCGGAGGAGGCGCTCCGGGCGGCGC
CGGCGGCCAAGAGGCAGAGGCTGAGGGAG

Homology of Contig U35_12448 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None