barSeed - Barley Seed Development Database

Probe CUST_21204_PI390587928

Source Contig U35_14855

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21204_PI390587928	Hv_44K_v2	ATGCTGTTAGTTTGTCGAGTATGCATAATGAAAGGTACCTCTGAATTTGAGCTCGTCAAA	1057	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62056.1	953	9e-22	181 - 238	98	57 / 58	minus	ABC02110 ABC37589 ABC49886
JLOC1	JLOC1_40592.2	3662	5e-22	3527 - 3584	98	57 / 58	plus
JLOC1	JLOC1_40592.1	3468	5e-22	3333 - 3390	98	57 / 58	plus
Harvest21	ABC02110	1521	4e-24	1427 - 1484	100	58 / 58	plus	ABC02110
Harvest35	U35_14855	1131	3e-25	1058 - 1117	100	60 / 60	plus

Contig Sequence (1131 bp)

>U35_14855 1131 Hv_44K_v2
CATAAGAATGCTGTCCAGGAAAGAATTGTCCAACGTCGTGAATCTGAGTTTAGTAGCCTA
AGGAAAGAGAGGGAAGAAAGGATTAATCACTTGCTATCTTCAAGAAAGCGTGAAAGGGAG
ACTGTACGCAAATTGATGTATTTTCTGAACATGGAGGAACAGCGGATCCAAAGGGTTCGT
GAGGAAGAGGAGGCTAGAAAGCGTGAAGAGGAAGAGAGGAGGAAGAAGGAGGAAGCTGAG
AGGAAGCTCAAGCTTGACGCAATCGCAGCTAAGCAGCTGCAGAGGGAGAGGGAGTTGGAA
GAGAGGGAAAAACAGAGAAGGGAGGCTCTCCTAAGAGGAGCAGAGCCCGTGCGCACAGCT
GATGCACCAGCTGCTGCTGCTGTCGCACCGCCAGCCCGTGAACCAGCAGCGGCTGCTCCA
GCTGCAGCAGCTGCCGCAGCTGGTGCTTCTCCTAGCAAGTATGTCCCCAAATGGAAACGT
GAGGGTGACAGTAGCAGTCAGAGGACGGCTGTTGCAGCTGAAACAGACCGGTGGGGGCGT
GATGATCGTCCTCGCCCTGCTCCCCGCCAGGAAGCTCCTCCTCTGCGTGATGCTCGTCCC
CTCCGCCAAGATGCCCCTCCTGCACGTGATGTCCGCCCCTTCCGCCAGGAGGCTCCTCCC
GCCGCACGTCAAGAGGCGCCCCCTGCCCGCCAGCCGGACGGTGCTGCTCCAGCTGCGTCT
ACTGAACGCTGGCGTCCTGGATCTAGGACCTCTGCAAATTCTTCATCCAACTCCTCTTCC
ACTGGCTGGAGGCGCTGAAGCTTCCTGGCCTGAAATGCGCCGTGCTCTTCCTGCCTGCTG
GCTGAGATTTTTGCCGTCCTCCTTCCAAGCCTGGGAGCTTCATACACAATTGAAGGTCTG
CCACTGGTATCTGGAAGCACGGTTACTTGAATTTGCTTGTTGCGCACCTAAATTTTCGAA
TGGAGACTTTGTACTATTTCTCAGTTATGTTTGATGTTTTGAGAGTCACAGTACTCATGC
ATAATGTGTTGCCCTTTGTTGTCGTATATTCCTGACTATGCTGTTAGTTTGTCGAGTATG
CATAATGAAAGGTACCTCTGAATTTGAGCTCGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14855 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None