barSeed - Barley Seed Development Database

Probe CUST_21131_PI390587928

Source Contig U35_14882

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21131_PI390587928	Hv_44K_v2	AATAGACTGTAGAAGACGATGCGTTGCGTCCTGAATGAATGTTGTTGAGACTCTAAAAAA	1383	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.298	1.252	1.080	0.974	0.418	0.399
Raw	16581.867	24769.073	18975.500	26770.903	4083.650	4222.183

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368609	1318	9e-22	1174 - 1228	100	55 / 55	plus	ABC07215
MLOC	MLOC_11572.1	1578	9e-22	8 - 62	100	55 / 55	minus	ABC07215
MLOC	MLOC_11572.2	1803	9e-22	8 - 62	100	55 / 55	minus	ABC07215
JLOC1	JLOC1_7675.2	1404	5e-22	1205 - 1259	100	55 / 55	plus
JLOC1	JLOC1_7675.1	1179	5e-22	980 - 1034	100	55 / 55	plus
Harvest21	ABC07215	1212	3e-25	1142 - 1201	100	60 / 60	plus	ABC07215
Harvest35	U35_14882	1454	3e-25	1384 - 1443	100	60 / 60	plus

Contig Sequence (1454 bp)

>U35_14882 1454 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGACAACCACATATATTGCCAGGTACTACTAGTCTGATCTCAC
AACCCAAACTGAACATAGTACAGTGTCATAATATTGCTTCAGCTAGATATCAAATTACCA
AAGATGGGTTCACTTTGCCGACATTGCAAAATTTTCAGACCAACACCCTTGAAAAAACCT
CAGTTCAATAACGGCTTGCTTTTCCAGTTGGCCTCAGGTTTAGTCGCCCTTGCGACGGAA
GGAGCAACCCTCGGTTAGCCTGGCCTTGCCCTGCCACGCCTATCGTCGCCACCCGCTCCG
CCGACCCGCCGCCGCGCCATGGTGAGGCTCAACGCCGACCTGATATGGAAGAGCCCGCAC
TTCTTCAACGCCATCAAGGAGCGCGAGCTCGACCTCCGAGGCAACAAGATCGCCATCATC
GAGAACATCGGCGCCACCGAGGACCAGTTTGACACGATTGACTTGTCGGACAATGAGATT
GTCAAGCTTGAGAACTTCCCTTTCATGAATCGCCTTGGCACTTTGTTAATCAACAACAAC
AGAATAACACGTATCAATCCCAACCTTGGTGAGTTTTTACCCAAGATGCATACTTTGGTG
CTGACGAACAATCGCCTTACAAGTCTTGCGGAGATTGACCCCCTGGCCTCTCTTCCAAAG
CTGCAATTTCTCAGCTTACTGGATAATACCGTAACTAAGCAACCAGACTATAGGTTATAT
GTGATCCACAAACTGAAGCATCTGCGTTTGCTGGACTTCAAGAAAGTGAAACAACAGGAG
AGAGCCGAAGCAGCCCAAAAGTTCCACTCAAAGGAGGCAGAGGAGGCGGCAAAGAAGGTT
GCTGCCAAAGCTTATATTCCAGTAGTGATGGATGCTCAAGGTACCACAAAAGACCAGGGC
CCTAAAGTAGTCGCTCCGACGGCTGCACAAATCACAGCTATCAAGGCCGCTATCGTGAAC
TCTCAGACACTTGATGAAGTTACAAGGCTTGAGAAGGCGTTGAGCACTGGCCAAGTTCCT
GCAGAGTTTGCGCTCCCCAAGCCTGACACCAACATGGCTGAAGCGTCAGAGGAGGCTGAA
GCCGAGAAGATGGAGACAGATGGTCAGGGCCCAGAGGATGGGGTTGTTGAGCAGAAGCAA
GCAGATGAAAGCACCCCAATTCAGGAGGATTGATGTCATGCATACACCTGAATCTGCCAG
TTCTCGTGGGGGGATGAAACCATGTGCCTAATCTTTCCTAATCTCACAGAAACCTCTTGA
TGAACTCTCTCCTTGTGTCAGTACTGATGTATCTTGTGGATGCTAACGACAATTTTGAGT
ACATGGTACTGTTGTCCGAGTTGTGGAAGGTTTACGCCCAGCGGACCTAGATGTGTTGGA
TGTAATAGACTGTAGAAGACGATGCGTTGCGTCCTGAATGAATGTTGTTGAGACTCTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_14882 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g13990.1	285	2e-124	protein\|U2 small nuclear ribonucleoprotein A, putative, expressed
Brachypodium v1_2	Bradi1g01530.1	284	2e-132
Arabidopsis v10	AT1G09760.1	249	5e-88	\| Symbols: U2A \| U2 small nuclear ribonucleoprotein A \| chr1:3159476-3161603 REVERSE LENGTH=249