barSeed - Barley Seed Development Database

Probe CUST_21129_PI390587928

Source Contig U35_14884

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21129_PI390587928	Hv_44K_v2	AAACGAGCGACTCTTTTAACTGATTATCTGTGAATTAGATGCATGAATGCCATTGAATGT	587	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11572.2	1803	2e-24	759 - 818	100	60 / 60	minus	ABC07215
JLOC1	JLOC1_7675.2	1404	8e-25	449 - 508	100	60 / 60	plus
Harvest21	ABC07214	659	3e-25	589 - 648	100	60 / 60	plus
Harvest35	U35_14884	653	3e-25	588 - 647	100	60 / 60	plus

Contig Sequence (653 bp)

>U35_14884 653 Hv_44K_v2
CCCGACTGCCACGCCTATCGTCGCCACCCGCTCCGCCGACCCGCCGCCGCGCCATGGTGA
GGCTCAACGCCGACCTGATATGGAAGAGCCCGCACTTCTTCAACGCCATCAAGGAGCGCG
AGCTCGACCTCCGAGGCAACAAGATCGCCATCATCGAGAACATCGGCGCCACCGAGGACC
AGTTTGACACGATTGACTTGTCGGACAATGAGATTGTCAAGCTTGAGAACTTCCCTTTCA
TGAATCGCCTTGGCACTTTGTTAATCAACAACAACAGAATAACACGTATCAATCCCAACC
TTGGTGAGTTTTTACCCAAGATGCATACTTTGGTGCTGACGAACAATCGCCTTACAAGTC
TTGCGGAGATTGACCCCCTGGCCTCTCTTCCAAAGCTGCAATTTCTCAGCTTACTGGATA
ATACCGTAACTAAGCAACCAGACTATAGGTTATATGTGATCCACAAACTGAAGCATCTGC
GTTTGCTGGACTTCAAGAAAGTGAAACAACAGGTTCATTCATTTCCTTCGGAATGATTTC
CAAAATGATTTTGGAACTGACCGCAGAAGTGCTGGCAGCAAAAGGGGAAACGAGCGACTC
TTTTAACTGATTATCTGTGAATTAGATGCATGAATGCCATTGAATGTTTTTTG

Homology of Contig U35_14884 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g13990.3	162	4e-89	protein\|U2 small nuclear ribonucleoprotein A, putative, expressed
Brachypodium v1_2	Bradi1g01530.1	284	4e-88
Arabidopsis v10	AT1G09760.1	249	1e-74	\| Symbols: U2A \| U2 small nuclear ribonucleoprotein A \| chr1:3159476-3161603 REVERSE LENGTH=249