barSeed - Barley Seed Development Database

Probe CUST_21125_PI390587928

Source Contig U35_14888

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21125_PI390587928	Hv_44K_v2	CTGGGAATATGGGTTTTAATCCTATTGGTGGTGAATAAAAACACGCATTGTAGCTAAATA	858	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249261.1	1000	2e-24	884 - 943	100	60 / 60	plus	ABC02159 ABC02160 ABC02161
MLOC	MLOC_51917.1	1245	2e-24	1003 - 1062	100	60 / 60	plus	ABC02161
JLOC1	JLOC1_33199.1	1127	8e-25	951 - 1010	100	60 / 60	plus
Harvest21	ABC35869	570	3e-25	49 - 108	100	60 / 60	minus
Harvest21	ABC02161	958	3e-25	855 - 914	100	60 / 60	plus	ABC02161
Harvest35	U35_14888	968	3e-25	859 - 918	100	60 / 60	plus

Contig Sequence (968 bp)

>U35_14888 968 Hv_44K_v2
GGAGACGAGAGGAGAGGAGAAAATAAAAGCAAACTTGAGAGACCATCCGTTCCTCACCCT
ACCAACCATCTTCCTTCCTTAGCGACGAGGCCACCCAGAGCTCCACACGAAGGAAAGCGC
GACCGGAGGAGGAGGAAGAAGAGGAGCAAGTATGTCGTCGGTGTTCAGCGGCGATGAGAC
GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATGCATGGGGGC
GGCCTACGGGACGGCCAAGAGCGGCGTCGGGGTGGCGTCCATGGGGGTCATGCGGCCAGA
GCTCGTCATGAAGTCCATCGTGCCCGTCGTCATGGCGGGAGTGCTCGGAATCTACGGCCT
CATCATCGCCGTCATCATCAGCACCGGGATCAATCCCAAGGCCAAGCCCTACTTCCTCTT
CGACGGCTACGCCCATCTCTCCTCCGGGCTCGCCTGTGGCCTCGCGGGGCTCGCCGCCGG
CATGGCCATTGGCATTGTCGGTGATGCTGGAGTCAGGGCTAATGCGCAACAACCAAAGCT
GTTCGTGGGTATGATCCTCATTCTCATTTTCGCAGAAGCGCTCGCCCTTTACGGTCTCAT
CGTGGGCATCATCCTCTCATCCCGTGCCGGCCAGTCCCGCGCGGATTAGGCGCCTTGCTC
TACCATTCCACAATTGCTATGCAGGCTACATTCTTGAGAAGTTGGAAGCTTTGAAAAGTT
CTAATTTTGATGTATTAAGGAGATATTTGTAGATTATTAAGGAAGGTGACACTTCCAGTA
CCGTTTTCATTCTTTTTGGGTTGTGGTGGGCGTTTGCTGTTGGTGCAGAGGATTTTGGGG
TAGGCTGGATTGCTGCTCCTGGGAATATGGGTTTTAATCCTATTGGTGGTGAATAAAAAC
ACGCATTGTAGCTAAATAATAAATTTATGATTATATTATGTTCATCAAAAAAAAAAAAAA
AAAAAAAA

Homology of Contig U35_14888 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g07140.1	166	2e-73	protein\|expressed protein
Brachypodium v1_2	Bradi4g41560.1	166	1e-73
Arabidopsis v10	AT1G19910.1	165	8e-71	\| Symbols: AVA-P2, AVA-2PE, ATVHA-C2 \| ATPase, F0/V0 complex, subunit C protein \| chr1:6913317-6914322 FORWARD LENGTH=165