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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_21037_PI390587928Hv_44K_v2GTCTCTCCCTGTGTGTCTTTGTGAGCATCTTCAGAAAGAGCTCCTATTATTATGAAAAAA521GeneList: salmon
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 10.5517.5631.7240.5690.1330.118
Raw 1918.5802386.182430.069239.00118.30118.558



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK250623.17522e-24650 - 70910060 / 60plus ABC03214 ABC03215 ABC03216 ABC03217 ABC06933 ABC38880
MLOCMLOC_60968.110522e-2482 - 14110060 / 60minus ABC03214 ABC03215 ABC03216 ABC03217 ABC06933 ABC38880
JLOC1JLOC1_39792.18728e-25733 - 79210060 / 60plus
Harvest21ABC032176513e-25533 - 59210060 / 60plusABC03217
Harvest21ABC032146151e-23531 - 58710057 / 57plusABC03214
Harvest35U35_154616223e-25533 - 59210060 / 60plus
Harvest35U35_154596093e-25522 - 58110060 / 60plus
Harvest35U35_425935791e-2359 - 1189859 / 60minus



Contig Sequence (609 bp)

>U35_15459 609 Hv_44K_v2
GCGAGCAGCTAGCTAGCACAGTCCCCTACCACCACCACCACCAGCCCACTCTATCAGCCT
CGGGTGAAGCCGAGCAGATCCATGGCGCAGTCTCGTCGCATGGCCGCGTCCGCCCTTCTG
CTGCTGGTCCTCCTCGTCGCCACAGAGATGGGGGCGACGACGGTGAAGGTGGCGGAGGCG
CGGGACTGCCTGTCGCAGAGCCACAAGTTCAAGGGCACGTGCCTCAGCAGCAGCAACTGC
GCCGCCGTCTGCCGCACCGAGAACTTCCCCGACGGCCAGTGCCACACCCAGAACCTCGCC
CGCAAGTGCTTCTGCAAGAGGGTCTGCTAGATCTGTTGCTGCTGTTGGTCAGTGTCGTTC
GCTAGATCTGTTCGTCAGTAGCTGCCTGCAGTTCGTGTGAATGTTGCCCCGTAATAAAGT
TAGGAAATCAATAACCGGGGTCTCGGTAGTTTGTGTTCGCCTCACGTCGGTTTGTGGATC
CTTTGTGTGGTAATAATGTAACAAGGTCGTTGTTCAGTATGGTCTCTCCCTGTGTGTCTT
TGTGAGCATCTTCAGAAAGAGCTCCTATTATTATGAAAAAAAAGATTCTCTCAAAAAAAA
AAAAAAAAA



Homology of Contig U35_15459 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None