- Probe CUST_21033_PI390587928
- Source Contig U35_27431
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21033_PI390587928 | Hv_44K_v2 | CTAGACCATGTGGTGGCAACAAACTTAAGTGTGATACAGAAGAACTTGTGGGATCCTGTG | 452 | GeneList: floralwhite MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.220 | 0.593 | 1.541 | 2.046 | 1.108 | 1.012 |
| Raw | 3.366 | 21.498 | 48.934 | 102.360 | 19.178 | 19.456 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252389.1 | 1146 | 2e-24 | 382 - 441 | 100 | 60 / 60 | plus | ABC20005 |
| MLOC | MLOC_6311.1 | 1359 | 2e-24 | 696 - 755 | 100 | 60 / 60 | minus | ABC20005 |
| MLOC | MLOC_6311.2 | 1303 | 2e-24 | 696 - 755 | 100 | 60 / 60 | minus | ABC20005 |
| MLOC | MLOC_6311.4 | 2016 | 2e-24 | 673 - 732 | 100 | 60 / 60 | minus | ABC20005 |
| MLOC | MLOC_6311.3 | 1690 | 2e-24 | 696 - 755 | 100 | 60 / 60 | minus | ABC20005 |
| JLOC1 | JLOC1_4108.1 | 1792 | 8e-25 | 936 - 995 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC23338 | 511 | 1e-24 | 453 - 511 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_27431 | 512 | 3e-25 | 453 - 512 | 100 | 60 / 60 | plus |
Contig Sequence (512 bp)
>U35_27431 512 Hv_44K_v2 CAGCTCACGTGTGCCAGGAGGCAGAGCACGTGGTTATCCCGCCACACGTGCCCCCGGAGG TGGCCCTCGAGCTACCGGAGCCGGAGAAGGCGCAAAGGGACATCTTTGCCTTCTTCCGGG GCAAGATGGAGGTCCATCCCAAGAATATCAGTGGCCGCTTCTACAGCAAGAAAGTGAGGA CTGAGCTACTACATCATTATGGTCGTAATAGCAAGTTCTACCTTAAGCGGAAGCGATACG ATGACTACCGATCAGAGATGGCCCGTTCTCTGTTCTGCCTCTGCCCGCTGGGCTGGGCAC CGTGGAGCCCTCGGCTCGTGGAATCAGTCCTGCTCGGTTGTGTCCCTGTCATAATTGCCG ATAATATACGCCTGCCATTCCCTTCTGTCCTTCGGTGGCCAGACATCTCATTACAGGTGG CCGAGAAGGATGTCGCCAGTCTTGAGACGGTGCTAGACCATGTGGTGGCAACAAACTTAA GTGTGATACAGAAGAACTTGTGGGATCCTGTG
Homology of Contig U35_27431 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g01760.1 | 430 | 5e-91 | protein|exostosin family domain containing protein, expressed |
| Brachypodium v1_2 | Bradi1g78027.1 | 442 | 1e-93 | |
| Arabidopsis v10 | AT2G28110.1 | 448 | 1e-69 | | Symbols: FRA8, IRX7 | Exostosin family protein | chr2:11978024-11979641 REVERSE LENGTH=448 |