barSeed - Barley Seed Development Database

Probe CUST_21021_PI390587928

Source Contig U35_27439

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21021_PI390587928	Hv_44K_v2	AACGGTGGAGGCGGAATAAACTCCGGCCACTTTTTGCAGCCGCCCGGAATTTGATACTCC	60	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9835.1	2501	2e-24	434 - 493	100	60 / 60	plus	ABC15670 ABC15705
MLOC	MLOC_9835.2	1971	2e-24	145 - 204	100	60 / 60	plus	ABC12811 ABC15670 ABC15705
JLOC1	JLOC1_6384.1	1847	8e-25	187 - 246	100	60 / 60	plus
Harvest21	ABC25881	751	3e-25	61 - 120	100	60 / 60	plus
Harvest35	U35_27439	751	3e-25	61 - 120	100	60 / 60	plus

Contig Sequence (751 bp)

>U35_27439 751 Hv_44K_v2
CTCCACCAAGGCCCAATCACAAGCATCCACTTTCTTTTTGCTCATCTTCTCAAGGCCTCC
AACGGTGGAGGCGGAATAAACTCCGGCCACTTTTTGCAGCCGCCCGGAATTTGATACTCC
CCCGGTCCTCCCCTATATAGGCACGCCTCCTTCCACCTCCCTCCTTCGCCACTTTCCTGC
CTTCCTCCATTGCTCGCCGTCCTAAGCCCAGCCGCTCAGGTAGGAGCACTAGAGCCGACA
TGATGGCGGAGGCGTGGATGAACGTGCTGCCGCCGCCGGCGCCCTACTTCGCCGGGCAGC
CGTGCTGGGCCGTGCAGCAGGAGCGTCGCGGAGGCGGCGCTTGGACGCTGGAGGAGAACA
AGGTGTTCGAGGAGGCGCTCGCGGCGATCGACCTGGACGCGCCGGACGGGTGGGAGATGG
TCGCGCTGATGCTGCCCAGGAAGACGGTGGCCGACGTGGTGAACCACTACAGGGCCCTCG
AGAACGACGTCGGGTTCATCGAGGCCGGGCTGGTCCCGTTCCCTCACTACGACAGCTCGT
CCCCTTCGTCCGGGTTCACTCTGGACTGGGACGGCGGCAGCGCCGGCGCCGGCGGGTTCC
GGCGCGGCTACTGCCTCAAGCGCGGGCGCGCCGACCAGGAGCGCAAGAAGGGCGTCCCGT
GGACGGAGGAGGAGCACCGGCTGTTCTTGAAGGGGCTGAAGAAGTACGGGCGAGGGGACT
GGAGGAACATCTCGCGCAACTACGTGACGAG

Homology of Contig U35_27439 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g63460.1	300	7e-73	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi2g55217.1	308	2e-80
Arabidopsis v10	None