barSeed - Barley Seed Development Database

Probe CUST_21012_PI390587928

Source Contig U35_15460

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21012_PI390587928	Hv_44K_v2	CCACCCCTCTCTCTCTATATATATGTGTAAGTGTGATCATTTTCAAAGAGACTATTATTG	576	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.758	3.850	1.378	0.816	0.312	0.371
Raw	901.904	1154.372	365.518	371.585	44.442	60.698

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10766.1	868	2e-23	11 - 68	100	58 / 58	minus	ABC03214 ABC03215 ABC03216 ABC03217
JLOC1	JLOC1_7062.1	914	1e-23	762 - 819	100	58 / 58	plus
Harvest21	ABC03216	643	4e-24	567 - 624	100	58 / 58	plus	ABC03216
Harvest21	ABC03215	663	1e-23	579 - 638	98	59 / 60	plus	ABC03215
Harvest35	U35_15460	659	3e-25	577 - 636	100	60 / 60	plus

Contig Sequence (659 bp)

>U35_15460 659 Hv_44K_v2
GACGTCGTCCAGTACGTCGTCGTCTCGGGTGAAGGTGGAGCAGAGCAGATCGATGGCGCT
CTCTCGTCGTCGCATGGCGGCGTCCGTCCTCCTCGTGCTGGTCCTCCTCGTCGCCACAGA
GATGGGGACGACGAGGGTGAAGATGGCGGGGGCGCGGGACTGCGTGCCGCAGAGCCACAA
TTTCAAGGGTGCATGCCTCAGCAGCAGCAACTGCGCCGCCGTCTGCCGCACCGAAAACTT
CCCCGGCGGCGAGTGCCACACGCCGCACGTCGAGCGCAAGTGCTTCTGCAAGAGGCCCTG
CTAGTCCGTCCCGCCGGCCAGCGCCGAGACGTCCGATCGACGCGTCCACGTTCGTCGTCA
CAGTTCTTACCTAGAGCTAGCATCCGTGCCGTTAAGTAGCTATGTTCTGTTCGTCTGTGT
GTTCTGCTTAGTGGAACTCTCATAATAAAGTAGAAAACCAATCGGGGTCTCGGTAGTTTA
CTTGGCTGTACGTCGTGTTTGTGCCTGATTTGTGTGTGGTGGTGTTATAAATATGGTGGC
GTTATATCAGCATGGTGTAACAATGCATCTACCTCTCCACCCCTCTCTCTCTATATATAT
GTGTAAGTGTGATCATTTTCAAAGAGACTATTATTGTGACTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15460 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None