barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_21011_PI390587928Hv_44K_v2GTCTCTCCCTGTGTGTCTTTGTGAGCATCTTCAGAAAGAGCTCCTATTATTATGAAAAAA532GeneList: salmon
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 10.5987.9171.7710.5600.1280.138
Raw 2006.4132584.753460.021248.57318.03722.439



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK250623.17522e-24650 - 70910060 / 60plus ABC03214 ABC03215 ABC03216 ABC03217 ABC06933 ABC38880
MLOCMLOC_60968.110522e-2482 - 14110060 / 60minus ABC03214 ABC03215 ABC03216 ABC03217 ABC06933 ABC38880
JLOC1JLOC1_39792.18728e-25733 - 79210060 / 60plus
Harvest21ABC032176513e-25533 - 59210060 / 60plusABC03217
Harvest21ABC032146151e-23531 - 58710057 / 57plusABC03214
Harvest35U35_154616223e-25533 - 59210060 / 60plus
Harvest35U35_154596093e-25522 - 58110060 / 60plus
Harvest35U35_425935791e-2359 - 1189859 / 60minus



Contig Sequence (622 bp)

>U35_15461 622 Hv_44K_v2
GCGGTGTCCTACGAGCAGCTAGCTAGCACAGTCCCCTACCACCACCACCACCAGCCCACT
CTATCAGCCTCGGGTGAAGCCGAGCAGATCCATGGCGCAGTCTCGTCGCATGGCCGGGTC
CGCCCTCCTGCTGCTGCTCCTCCTCGTCGCCACAGAGATGGGGGCGACGACGGTGAAGGT
GGCGGAGGCGCGGGACTGCCTGTCGCAGAGCCACAAGTTCAAGGGCACGTGCCTCAGCAG
CAGCAACTGCGCCGCCGTCTGCCGCACCGAGAACTTCCCCGACGGCCAGTGCCACACCCA
GAACCTCGCCCGCAAGTGCTTCTGCAAGAGGGTCTGCTAGATCTGTTGCTGCTGTTGGTC
AGTGCCGTTCGCTAGATCTGTTCGTCAGTAGCTGCCTGCAGTTCGTGTGACTGTTGCCCC
GTAATAAAGTTAGGAAATCAATAACCGGGGTCTCGGTAGTTTGTGTTCGCCGCACGTCGT
GTTTGTCGATGCTTTGTGTGGTAATAATGTAACAAGGTCGTTGTTCAGTATGGTCTCTCC
CTGTGTGTCTTTGTGAGCATCTTCAGAAAGAGCTCCTATTATTATGAAAAAAAAGATTCT
CTCAAAAAAAAAAAAAAAAAAA



Homology of Contig U35_15461 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None