- Probe CUST_21006_PI390587928
- Source Contig U35_15466
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21006_PI390587928 | Hv_44K_v2 | GCGAGCAGCGATTTGTTTGTAAAATTACAAGATACTACTGTAATGTTTATTACTAGGAGC | 573 | GeneList: royalblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.679 | 5.210 | 1.268 | 0.678 | 0.333 | 0.486 |
| Raw | 397.855 | 614.030 | 121.792 | 118.197 | 17.157 | 27.912 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK359305 | 818 | 2e-24 | 482 - 541 | 100 | 60 / 60 | plus | ABC03353 ABC03354 |
| MLOC | MLOC_75972.2 | 381 | 2e-24 | 51 - 110 | 100 | 60 / 60 | minus | ABC03353 |
| MLOC | MLOC_75972.1 | 631 | 2e-24 | 54 - 113 | 100 | 60 / 60 | minus | ABC03353 |
| MLOC | MLOC_75972.3 | 581 | 2e-24 | 51 - 110 | 100 | 60 / 60 | minus | ABC03353 |
| MLOC | MLOC_75972.4 | 760 | 2e-24 | 51 - 110 | 100 | 60 / 60 | minus | ABC03353 ABC03354 |
| MLOC | MLOC_75972.5 | 396 | 9e-22 | 324 - 378 | 100 | 55 / 55 | plus | ABC03353 |
| JLOC1 | JLOC1_50677.1 | 869 | 8e-25 | 629 - 688 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50676.4 | 1949 | 8e-25 | 1262 - 1321 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_50676.3 | 1900 | 8e-25 | 1213 - 1272 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_50676.2 | 3599 | 8e-25 | 2912 - 2971 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_50676.1 | 1968 | 8e-25 | 1281 - 1340 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC40638 | 617 | 3e-25 | 77 - 136 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC03353 | 680 | 3e-25 | 574 - 633 | 100 | 60 / 60 | plus | ABC03353 |
| Harvest35 | U35_43690 | 617 | 3e-25 | 77 - 136 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_15466 | 680 | 3e-25 | 574 - 633 | 100 | 60 / 60 | plus |
Contig Sequence (680 bp)
>U35_15466 680 Hv_44K_v2 AAAACCTTCTCTTCCACCTTCCTGCGAACCAAGTGCGAAGCCATGGCCACCATCACCACC ATGGCCTTCATGGCCACCTTTCCGGCTCCCAGAAGCGTTGCGCAGCCGTCGGCCACGCTG CCATCTCGCCCGAGCGTCGTGTCGTTCGCGGCCCGGGCGATGCGCGCGCACGGCCGGCGG CTGGTGGCCGTGGCGGGCTCGCCGTCCACGCCCCCGGAGCTGGCGCAGAAGGTGACGGAG AGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCAGTGGGCGGCGAGTGCGTGGCG GCGTGGGACGAGGTGGAGGAGCTCAGCGCCGCGGCCAGCCACGCGCGCGACCGCAAGAAG GAACACAGCGACCCGCTCGAGGAGTTCTGCGAGGACAACCCCGAGACCGACGAGTGCCGC ACCTACGACAGCTAGCCGTGCGAGCTCGTGCCGGCTTCTGCCATTGCCGGCCGTCATCAT GAGCGGTAGCTTCGAGCTTAGCTTCCGTGGCACATTGGCATCTTGGGCGTGTAAGTTTGG TTTGTTGCTTTATTTGGCTTGGCTTACAATAAAGCGAGCAGCGATTTGTTTGTAAAATTA CAAGATACTACTGTAATGTTTATTACTAGGAGCTATGAGTCATGAGTGTGATACCAAATT ATCAAAAAAAAAAAAAAAAA
Homology of Contig U35_15466 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g64540.1 | 127 | 2e-53 | |
| Arabidopsis v10 | None |