- Probe CUST_21004_PI390587928
- Source Contig U35_15468
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21004_PI390587928 | Hv_44K_v2 | CCAGGGACATACGTGTGGTTGATATACAATTGATGATACATATACGTTTATTCAAAGTTG | 605 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 6.524 | 5.990 | 1.154 | 0.823 | 0.443 | 0.524 |
| Raw | 186.771 | 267.003 | 45.852 | 58.775 | 9.133 | 12.911 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK371825 | 732 | 2e-24 | 606 - 665 | 100 | 60 / 60 | plus | ABC03353 ABC03354 |
| MLOC | MLOC_65860.1 | 980 | 2e-24 | 725 - 784 | 100 | 60 / 60 | plus | ABC03353 ABC03354 |
| JLOC1 | JLOC1_43362.1 | 983 | 8e-25 | 726 - 785 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03354 | 743 | 3e-25 | 579 - 638 | 100 | 60 / 60 | plus | ABC03354 |
| Harvest21 | ABC03355 | 660 | 5e-23 | 592 - 647 | 100 | 56 / 56 | plus | |
| Harvest35 | U35_15468 | 770 | 3e-25 | 606 - 665 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15467 | 781 | 5e-23 | 592 - 647 | 100 | 56 / 56 | plus |
Contig Sequence (770 bp)
>U35_15468 770 Hv_44K_v2 TCGAGCACTGTTGGCCTCTGGGTTACAGCGCAACCACATAAAATTTCCGCCAAACCCACC ACACACCCAGCAATGGCGTCCGCGCTCACCAACGTGAGCCTGTCTACCTTCGCGCCCACG GCCAGGGGCGACGTCCTCGCCAGGCCGCAGGTGGCCGCCGCCGCCGCCCGGGTCACCTTC CCGACGGCGTACCGCGGCAGCGGCGCCCTCTCCTGCAGGGCGGGCGGGCCGTCCACGCCG TCGGGCATCTCCGACAAGATGTCGGAGAGCATCAAGGAGGCCCAGGAGACGTGCTCGGAG GACGCCGCTAGCGGGGAGTGCGCGGCGGCGTGGGACGAGGTGGAGGAGCTCAGCGCAGCG GCCAGCCACGCCCGGGACAAGCTCAAGGACTCCGACCCGCTCGAGAACTACTGCAAGGAG AACCCCGAGACCGACGAGTGCCGCACCTACGACAGCTGAGCGTAGCTAATTTGTTGTGGA CGTACGGCGGATACTCAAGGTGGACGTGCGTGGTATTTCTTGGCTCGTGGGGGGCCGGGA AAACTATGTCGATCGACTCAGCCTACCGTTACCTTGTATGTAGTAAAAATGCTCGAAATA TTTTCCCAGGGACATACGTGTGGTTGATATACAATTGATGATACATATACGTTTATTCAA AGTTGTATTAAGAAAAAAAAAAAAAATCGTTATGATGCAGAGACGAGAGCCAGATCGAAC GCTGTTTTGGCCATCAGATCGCACTGCACGCANAAAAAAAAAAAAAAAAA
Homology of Contig U35_15468 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi2g11550.1 | 128 | 2e-56 | |
| Arabidopsis v10 | None |