barSeed - Barley Seed Development Database

Probe CUST_20909_PI390587928

Source Contig U35_23481

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20909_PI390587928	Hv_44K_v2	GAGAAGGATCAAAAGCAAGCATTGCCATCCTTCATGTGTAATAAGGATCAAATCAATAAA	461	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250674.1	1131	2e-24	1055 - 1114	100	60 / 60	plus	ABC20930
MLOC	MLOC_18149.1	738	2e-24	609 - 668	100	60 / 60	plus	ABC20930
MLOC	MLOC_18151.1	1669	2e-24	610 - 669	100	60 / 60	plus	ABC12066 ABC20930
JLOC1	JLOC1_12552.1	1945	8e-25	1056 - 1115	100	60 / 60	minus
JLOC1	JLOC1_12551.1	1255	8e-25	1126 - 1185	100	60 / 60	plus
Harvest21	ABC20930	560	3e-25	462 - 521	100	60 / 60	plus	ABC20930
Harvest35	U35_23481	560	3e-25	462 - 521	100	60 / 60	plus

Contig Sequence (560 bp)

>U35_23481 560 Hv_44K_v2
AGCCCCACTACTGCATGGCTGACGGACCCCCCCACCATTGGTGCGCCGTGTACATACATA
CATGATATACAAGGCAGCCTAAACAGACCACCCAGTGATTCCAAACCAGTCATACAGATT
TCTTAGATGGGTTATCAAGATGGAGCAGCAGGGAAATGATGTCTCTTTCGGGTTGATCAT
GTCGATGTGATGTGGGGGGGCTGGATTTTGTATTTGGATCCACCTGTGCCGTAGGTCTTG
GATCGTGTCAGTGTGTCGCATTCGAGACCGAAAGGGAAGATGCTCTGGGGGGGAAATGTT
TGCTCCGGAGAGGGAAAAAACTGGTCAGTGGCTGTATGTTGTTCGTCGTGGTAGGCTCAA
CTGTGATTAGTCCAGAGTTTGTTTTAATTTTACCCCTGATTCATCTTGTTCCCCTTTTTT
CTGTTTATTTCAATGTATGTGTTTTGTTTCCATTGTTAGTTGAGAAGGATCAAAAGCAAG
CATTGCCATCCTTCATGTGTAATAAGGATCAAATCAATAAAAATGATTCATTCGTTTCAA
TTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_23481 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None