barSeed - Barley Seed Development Database

Probe CUST_20901_PI390587928

Source Contig U35_35461

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20901_PI390587928	Hv_44K_v2	GGAGCGTGTAATTGTAATCATATATACGTCCATGCAAATGTCTTTCCTTTTGTTTTCTTG	243	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63125.1	1282	2e-24	1036 - 1095	100	60 / 60	plus	ABC02208 ABC02209 ABC02213 ABC02214
MLOC	MLOC_63125.2	767	2e-24	521 - 580	100	60 / 60	plus	ABC02208 ABC02213
JLOC1	JLOC1_41341.1	1245	8e-25	946 - 1005	100	60 / 60	plus
Harvest21	ABC02208	828	3e-25	701 - 760	100	60 / 60	plus	ABC02208
Harvest35	U35_35461	323	3e-25	244 - 303	100	60 / 60	plus
Harvest35	U35_700	868	1e-24	701 - 759	100	59 / 59	plus
Harvest35	U35_35113	831	1e-23	65 - 124	98	59 / 60	minus

Contig Sequence (323 bp)

>U35_35461 323 Hv_44K_v2
GGAAGGGCATGGTGGTACCGGAATTGGCCATTACGGCGGGCAAGGCGAGGCTACCCTGAC
GCCGAAGCCAAGTAGTACGTACGTGCGTGTGGATGTGATCATACATGCATACGTACGTGC
TTATGTTTTCGTGTGTGTGTGTGTCTTTTGAATATTTATTTACGTCTGTATACATATGTT
ACTTATACAGTACGTACGTAAATAAGCACACATTACGGCCAGCATGTATCTATGCGGCTC
TGTGGAGCGTGTAATTGTAATCATATATACGTCCATGCAAATGTCTTTCCTTTTGTTTTC
TTGTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_35461 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None