barSeed - Barley Seed Development Database

Probe CUST_20888_PI390587928

Source Contig U35_47447

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20888_PI390587928	Hv_44K_v2	TGTGGACGGAGAGCAAGGACGTGGGCAAGGGCTTCCGCTGCATCCGCATGGACAACAACA	324	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357931	1737	7e-23	391 - 450	98	59 / 60	plus	ABC01244 ABC01247
MLOC	AK253026.1	1501	7e-23	391 - 450	98	59 / 60	plus	ABC01244 ABC01246 ABC01247 ABC01249 ABC31028 ABC48413 ABC48525
MLOC	MLOC_59149.2	1755	7e-23	686 - 745	98	59 / 60	plus	ABC01244 ABC01246 ABC01247 ABC01249 ABC48413
MLOC	MLOC_59149.1	1848	7e-23	734 - 793	98	59 / 60	plus	ABC01244 ABC01246 ABC01247 ABC01249 ABC48413 ABC48525
JLOC1	JLOC1_38466.2	1836	4e-23	645 - 704	98	59 / 60	plus
Harvest21	ABC01256	661	1e-23	309 - 368	98	59 / 60	plus
Harvest21	ABC01255	806	1e-23	350 - 409	98	59 / 60	plus
Harvest21	ABC01254	1509	1e-23	382 - 441	98	59 / 60	plus
Harvest21	ABC01253	658	1e-23	371 - 430	98	59 / 60	plus
Harvest35	U35_47447	446	3e-25	325 - 384	100	60 / 60	plus
Harvest35	U35_403	1205	1e-23	408 - 467	98	59 / 60	plus
Harvest35	U35_268	806	1e-23	350 - 409	98	59 / 60	plus

Contig Sequence (446 bp)

>U35_47447 446 Hv_44K_v2
CAGACTCGCTATGGTAGCCGCCAAGATGTTCGGGTTCGGGCACCACCACAAGGACCAGGG
CGCCGGCGGCGTCCGGCCCCAACCAGATCTTCAAGATCTACTGCCGGGCCTCCGAGGTCG
TGCTCGCCCCCGTCAACCCCAAGGACGAGACCCAGCACTGGCTCAAGGACATGCGCTTCA
GCACCACCGTCAAGGACGAAGAGGGCATGCCGGCCTTCGCGCTCGTCAACAAGGCCACCG
GCCTCGCCGTCAAGCACTCCATCGGCCAGTCCCACCCCGTGAAGCTGGTGCCGTTCAACC
CGGCGTACGAGGACGCATCGGTGCTGTGGACGGAGAGCAAGGACGTGGGCAAGGGCTTCC
GCTGCATCCGCATGGACAACAACACCCGCCTCGGCTTCGACGCCCTCAACGGCGACAAGG
ACCACGGCGGCGTGCACGACGGCACC

Homology of Contig U35_47447 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48490.2	344	2e-70	protein\|stress responsive protein, putative, expressed
Brachypodium v1_2	Bradi1g17460.1	346	4e-76
Arabidopsis v10	None