barSeed - Barley Seed Development Database

Probe CUST_206_PI415269222

Source Contig TA43818_4513

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_206_PI415269222	Hv_44K_v2	GTGCATGTAGATACAAACTTGTGTGTTCTGGACCATCTGAAGTCTCTCATAGTAATCAAT	640	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368073	1535	3e-21	1366 - 1422	98	56 / 57	plus	ABC15629
JLOC1	JLOC1_53682.1	202	4e-23	12 - 71	98	59 / 60	minus
JLOC1	JLOC1_53430.1	241	4e-23	167 - 226	98	59 / 60	minus
JLOC1	JLOC1_52970.1	203	4e-23	11 - 70	98	59 / 60	plus
JLOC1	JLOC1_50580.1	249	4e-23	172 - 231	98	59 / 60	plus
JLOC1	JLOC1_527.1	213	5e-22	156 - 213	98	57 / 58	minus
JLOC1	JLOC1_6298.1	232	2e-21	176 - 232	98	56 / 57	minus
JLOC1	JLOC1_606.1	164	2e-21	19 - 78	97	58 / 60	minus

Contig Sequence (700 bp)

>TA43818_4513 700 Hv_44K_v2
GCACGAGGCCTCGTGCCGCGGAAACCTCCATAGGTCAAGCACTATGCCGGGGGTGATAAA
GGATACTGAGATAACTACTGAAACTACGGGTCCATCAAATCTGGAAAGGTCAAAAACTGA
GAGGCGCAAACAAAGTAACCCAGCTGATGATCCTGCTAAACAGTTATTGGATGATAAGAT
TTCCATAAGGAAAAAGCTCAAAATGTTAAATCGAATAGCTACAGTGAAGGATGATGGAAC
TGTGGTTGTTAATGTACCAAGTACACTAGATGCGACTCCAATTGACGTTGGAGCAGTGGA
TGGCTATGAGGATGATGTAGTTGAAGAATCATTTTGTAGTCAGCCGCTCATCTCTTAACT
AGCATCAGTGATTCAAGGCCTAGGGGTGTTCCACGATGAACAACCTTGTCAGTTCAGTCT
AGTGTAAGATTTATATATGTGGAAACAGCAGAGACCTTGACTCGCAGTTTGCAAACATGT
CTTTGAAACACAAGGATATATTGTTAACTATGGTACTCAACTTATTGATGCACATGGACA
TGATGACTCTCTAGCGTTTATGGACCAACCAACCTGTAATCATGGACCTTATTGTCTTGT
AGACCATTTGGTGTTTCGAGTGTTTTGGAGCTTGCCCTTTGTGCATGTAGATACAAACTT
GTGTGTTCTGGACCATCTGAAGTCTCTCATAGTAATCAAT

Homology of Contig TA43818_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g01230.1	615	4e-51
Arabidopsis v10	None