barSeed - Barley Seed Development Database

Probe CUST_20673_PI390587928

Source Contig U35_49367

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20673_PI390587928	Hv_44K_v2	ATAGCTTTTGGCTGGTGTGATGTACAGAGGATAGCGTGCGTGATATAACTCGCCATTTTG	465	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.373	1.664	1.261	0.846	0.377	0.405
Raw	927.877	1788.702	1143.952	1233.641	191.259	222.057

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251809.1	1353	2e-24	1165 - 1224	100	60 / 60	plus	ABC41046
MLOC	MLOC_22570.1	1709	2e-24	244 - 303	100	60 / 60	minus	None
MLOC	MLOC_22570.2	1136	2e-24	149 - 208	100	60 / 60	minus	None
JLOC1	JLOC1_15645.1	922	8e-25	707 - 766	100	60 / 60	plus
Harvest21	ABC51029	553	3e-25	466 - 525	100	60 / 60	plus
Harvest35	U35_49367	553	3e-25	466 - 525	100	60 / 60	plus

Contig Sequence (553 bp)

>U35_49367 553 Hv_44K_v2
TCAGCTGAGGTACATGAGCTGTTGAATGAAAGGTATTTGCTGCTGAGAGAAACTCTGATC
CTTCTAAATCGATTAGCCTCGCACGCCATGTTTTCGAAGCCAACCCTGGAGGTGCTGACG
GGGAGCAAGCGGTGCGCGGGCCTGACAATCGACATCGCGAACCGGTTGCCCCAGAGGAGC
AAGTACCCCTTGAGGCAGCTCAGCGAGATAAACCCTCAGATGGCGAACGGTCTTGCCGAA
CTGGCCCAGAAGTTCCGTTCGAGGGTGTACGGCTTCCTAGAGGAGCAACAGCATCCAACG
GTTGACTGTCGCGATACAGGCGCCTCGGGCAAGCCTCCGAGAGTTCCAAGATAGCTGAGC
GTGGACAACACTGTAACATGGGAATCAGCTGGGGCCTATATATTCTCTAGGTTAGTAGAG
ATATCTTGTTTTGCGCGTAGTAGGGTCGGTTGGCTGGGCGAGTAAATAGCTTTTGGCTGG
TGTGATGTACAGAGGATAGCGTGCGTGATATAACTCGCCATTTTGGGGGCAGTCCGGGAA
TGTAAGCCTGGCA

Homology of Contig U35_49367 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None