barSeed - Barley Seed Development Database

Probe CUST_20669_PI390587928

Source Contig U35_37393

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20669_PI390587928	Hv_44K_v2	GCTTGAGATGATATTACCTGACAAAAGACAGTTGATGGATGCAACGAGTTATGTTAAAAA	161	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5925.2	3091	9e-22	8 - 62	100	55 / 55	minus	ABC11670
MLOC	MLOC_5925.1	3090	9e-22	71 - 125	100	55 / 55	minus	ABC11670
JLOC1	JLOC1_3842.3	3123	5e-22	2968 - 3022	100	55 / 55	plus
JLOC1	JLOC1_3842.2	3120	5e-22	2965 - 3019	100	55 / 55	plus
JLOC1	JLOC1_3842.1	2895	5e-22	2740 - 2794	100	55 / 55	plus
Harvest21	ABC11670	1415	2e-22	1329 - 1383	100	55 / 55	plus	ABC11670
Harvest35	U35_37393	233	3e-25	162 - 221	100	60 / 60	plus
Harvest35	U35_852	1408	2e-22	1329 - 1383	100	55 / 55	plus

Contig Sequence (233 bp)

>U35_37393 233 Hv_44K_v2
CACGCGTCCGGGTTGTTGATGGCGAGATTGCTTTGCTTCAAGAAGATTTAAATGCGGCTA
CCGCCATGCAGTCCTGGATGGGATAATTTTACAGTGCAACTGGGGTTGGTTTTGTGTGGT
TCATGTACCTTGGATACTTTGCTCCCTTAGATTAGTGTTAAGCTTGAGATGATATTACCT
GACAAAAGACAGTTGATGGATGCAACGAGTTATGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_37393 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None