- Probe CUST_20669_PI390587928
- Source Contig U35_37393
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_20669_PI390587928 | Hv_44K_v2 | GCTTGAGATGATATTACCTGACAAAAGACAGTTGATGGATGCAACGAGTTATGTTAAAAA | 161 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_5925.2 | 3091 | 9e-22 | 8 - 62 | 100 | 55 / 55 | minus | ABC11670 |
MLOC | MLOC_5925.1 | 3090 | 9e-22 | 71 - 125 | 100 | 55 / 55 | minus | ABC11670 |
JLOC1 | JLOC1_3842.3 | 3123 | 5e-22 | 2968 - 3022 | 100 | 55 / 55 | plus | |
JLOC1 | JLOC1_3842.2 | 3120 | 5e-22 | 2965 - 3019 | 100 | 55 / 55 | plus | |
JLOC1 | JLOC1_3842.1 | 2895 | 5e-22 | 2740 - 2794 | 100 | 55 / 55 | plus | |
Harvest21 | ABC11670 | 1415 | 2e-22 | 1329 - 1383 | 100 | 55 / 55 | plus | ABC11670 |
Harvest35 | U35_37393 | 233 | 3e-25 | 162 - 221 | 100 | 60 / 60 | plus | |
Harvest35 | U35_852 | 1408 | 2e-22 | 1329 - 1383 | 100 | 55 / 55 | plus |
Contig Sequence (233 bp)
>U35_37393 233 Hv_44K_v2 CACGCGTCCGGGTTGTTGATGGCGAGATTGCTTTGCTTCAAGAAGATTTAAATGCGGCTA CCGCCATGCAGTCCTGGATGGGATAATTTTACAGTGCAACTGGGGTTGGTTTTGTGTGGT TCATGTACCTTGGATACTTTGCTCCCTTAGATTAGTGTTAAGCTTGAGATGATATTACCT GACAAAAGACAGTTGATGGATGCAACGAGTTATGTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_37393 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |