barSeed - Barley Seed Development Database

Probe CUST_20606_PI390587928

Source Contig U35_8344

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20606_PI390587928	Hv_44K_v2	CGATGGGCTTGTCTACATATGGAACTATGAAACCCAGAAAAAACTGACGGAGGTGAAGAT	1090	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251994.1	3005	7e-23	1972 - 2031	98	59 / 60	plus	ABC12390 ABC18016 ABC18418
MLOC	AK355574	4044	7e-23	1716 - 1775	98	59 / 60	plus	ABC12390 ABC18016 ABC18418
MLOC	MLOC_14397.6	2287	7e-23	350 - 409	98	59 / 60	minus	ABC12390 ABC18016
MLOC	MLOC_14397.9	3177	7e-23	29 - 88	98	59 / 60	minus	None
MLOC	MLOC_14397.10	2970	7e-23	29 - 88	98	59 / 60	minus	None
MLOC	MLOC_14397.7	3495	7e-23	350 - 409	98	59 / 60	minus	ABC12390 ABC18016
MLOC	MLOC_14397.1	3279	7e-23	350 - 409	98	59 / 60	minus	ABC12390 ABC18016
MLOC	MLOC_14397.2	2022	7e-23	350 - 409	98	59 / 60	minus	ABC12390 ABC18016
MLOC	MLOC_14397.3	2416	7e-23	350 - 409	98	59 / 60	minus	ABC12390 ABC18016
MLOC	MLOC_14397.4	2346	7e-23	350 - 409	98	59 / 60	minus	ABC12390 ABC18016
MLOC	MLOC_14397.5	2230	7e-23	350 - 409	98	59 / 60	minus	ABC12390 ABC18016
MLOC	MLOC_14397.8	2409	7e-23	350 - 409	98	59 / 60	minus	ABC12390 ABC18016
JLOC1	JLOC1_9838.9	3182	4e-23	1864 - 1923	98	59 / 60	plus
JLOC1	JLOC1_9838.8	3252	4e-23	1934 - 1993	98	59 / 60	plus
JLOC1	JLOC1_9838.7	4004	4e-23	2686 - 2745	98	59 / 60	plus
JLOC1	JLOC1_9838.6	3065	4e-23	1747 - 1806	98	59 / 60	plus
JLOC1	JLOC1_9838.5	3031	4e-23	1713 - 1772	98	59 / 60	plus
JLOC1	JLOC1_9838.4	2836	4e-23	1518 - 1577	98	59 / 60	plus
JLOC1	JLOC1_9838.3	4209	4e-23	2891 - 2950	98	59 / 60	plus
JLOC1	JLOC1_9838.2	2931	4e-23	1613 - 1672	98	59 / 60	plus
JLOC1	JLOC1_9838.1	4310	4e-23	2992 - 3051	98	59 / 60	plus
Harvest21	ABC16983	1150	3e-25	1091 - 1150	100	60 / 60	plus
Harvest35	U35_8344	1150	3e-25	1091 - 1150	100	60 / 60	plus

Contig Sequence (1150 bp)

>U35_8344 1150 Hv_44K_v2
TGCTCTGTTTCGAGTATGTACCAAATAGAAGCCTCCGTGATTATATAACCGATGCATCTC
ATGGACTCGAATGGAGAAGGCGTTACCTAATAATTAAAGGGGTTTGTGACGGTTTAAATT
ATCTACATGAAAATAATATTGTTCACCTGGATCTTAAGCCGGAGAACATACTGATGGATG
AAAATATGAATCCAAAAATAACCGACTTTGGACTTTCAAGGTGTTTTGATGTAGATCAAA
GCAAGGCTCCAGCTACAAAAGTAGTTGGAACAATGGGATACATGCCACCGGAGTTCTACA
GCAGCCGCGTGATCACACGCACACATGACATATATAGTCTCGGTATAATTATCAGCGAGA
TACTAACTGGCGAGAAGGGGTATCATCAAACGGAGGATGTAGTTGATAGTTGGAGGAAAA
GGTTGGAGGTATCAAACGAAGCTTGCGTGTTGGAACAGATACGGTTGTGCGCTAACATAG
GGATAGAGTGCACCGAATATAACCCAGCGAAGAGACCATGTAGTGTACAAGATATAATAG
ACAGGCTTGAGGAAACGGAAAGTGCGGACGAGTCATCAGCCGAACAGATGAGTTCACCCA
TGCCCACTGTGCGCGGGTTGCTGCATGTCCCTCAGGACCAGCTTCGCTTCCCCTTGTTCG
ATCCAGACAAGGATGTCTTCTCCCCAATGCGCCTAACTAACAATACAAATGATCATATTG
CCTTTAGGTGTTTTCCAAAATTCCCGGGGAGTTTCATCGGCAAACTCTCGAAGCTTTCTG
GCATTGTGCCTCCAAGGTCCACTCGCACTTTCCTTGTATGGATGGAAAAGCAGCCGCCAG
AGAACATAGAAAAAATTGACATGGTCCTAGAGAGTTGTGTAGCGCACAAGGCCATAGAGA
ACATGGAGGACAACTTTTTGCAGGAAATCAGAGAACAAGTTGGAGGTAAGGTGCATCAGG
TACCTCTAGTGGCAGTTTGCAACCCAGCGGGAGAGACGATCCAGTCACAAATAAAGATCA
TATGCCGCATGGATTTCTTGGTTGCAATGGATGTACACCCTACAGAACCATGGGTTTTGG
TGGGTCAGTACGATGGGCTTGTCTACATATGGAACTATGAAACCCAGAAAAAACTGACGG
AGGTGAAGAT

Homology of Contig U35_8344 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g30030.1	464	3e-55	protein\|cysteine-rich receptor-like protein kinase 12 precursor, putative, expressed
Brachypodium v1_2	Bradi4g21980.1	1144	9e-56
Arabidopsis v10	None