barSeed - Barley Seed Development Database

Probe CUST_20605_PI390587928

Source Contig U35_8345

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20605_PI390587928	Hv_44K_v2	ACTCATGGATACAGTCCAGACACTTCCAACAGAAAAGGATGACTGATTCCTTTTTAAAAA	355	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22250.1	2272	7e-23	388 - 444	100	57 / 57	minus	ABC11172
MLOC	MLOC_22250.2	1335	7e-23	388 - 444	100	57 / 57	minus	ABC11172
JLOC1	JLOC1_15424.1	1297	4e-23	623 - 679	100	57 / 57	plus
Harvest21	ABC17602	415	3e-25	356 - 415	100	60 / 60	plus
Harvest35	U35_8345	415	3e-25	356 - 415	100	60 / 60	plus

Contig Sequence (415 bp)

>U35_8345 415 Hv_44K_v2
GCTTGAGCTCTCCGCCCTCTCCCCAGTCGCCCCGCCGCCGCGGCCTCCTTGCTGCCTGCG
TCCGCTTTCGTCCTCCGTCTCCTCCTCGTCTTCCCCGCTCCGAGGATGGAGGAGCCGCCG
CGGTACAAGTTCGGGCCGTATAAGATCGACGCGAGGGAGGTCTTCCACGCCACGCCCCTC
TCGTACGCCATGGTCAACCTCCGCCCCCTCCTCCCTGGTCATATCCTTTGATTTGGCAAA
GACGATATTTAGACTTTATGAGAATGCTAATGAGGACATGCCTGGATGGGGTCTCCTCGT
TTTGTCATACCATCAATAACTTTGATTCACTTGCTTGTTTATTATGCCTACTAAAACTCA
TGGATACAGTCCAGACACTTCCAACAGAAAAGGATGACTGATTCCTTTTTAAAAA

Homology of Contig U35_8345 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None