barSeed - Barley Seed Development Database

Probe CUST_20604_PI390587928

Source Contig U35_8346

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20604_PI390587928	Hv_44K_v2	TGAAGAACAAGAACCTCTCCGTGTACAACAGGCTCAAGACGCTGTGCACCAACACGGCTC	439	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.316	1.184	1.408	0.744	0.464	0.392
Raw	188.849	241.283	276.167	216.609	50.842	46.290

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68937.2	3215	2e-24	418 - 477	100	60 / 60	plus	ABC10213 ABC40201
MLOC	MLOC_68937.3	4028	2e-24	418 - 477	100	60 / 60	plus	ABC10213 ABC40201
MLOC	MLOC_68937.1	3201	2e-24	452 - 511	100	60 / 60	plus	ABC10213 ABC40201
JLOC1	JLOC1_45655.1	3262	8e-25	492 - 551	100	60 / 60	plus
Harvest35	U35_8346	499	3e-25	440 - 499	100	60 / 60	plus

Contig Sequence (499 bp)

>U35_8346 499 Hv_44K_v2
AAAACCCAGACCCAGGTTAAGCTCAACCCGGTGCTAGACGACCACGGCACGCACCAAACC
TATTAAACCGCTTCACTCCTTCACCGCCGCCGCCGCCATTCGCCGCCGAAGGTCTGCCCC
CCACCCGTCTTCCTCGCGCCCCCCGCCGCCGCCGCTCCCCAGCGCCCGGCCGAGCTCGCC
AAGATGCTGCAGAGCAAGTCGTTCGTCAAGAAGACGAAGCAGGGCCGCGTCGTCAAGGTG
GTCCGGGAGCACTACCTCCGCGACGACATCCCCTGCGGCGCCTTCTCCTGCCCCTCCTGC
GACGCGGCCGCCCGCCGCCTCAACGCCGACGCCGCCGCCATCCTCGTCGTCGACACCAAC
GTCGTGCTCCACCAGATCGATTTGTTGGAGAATCCGGCGATTGAGGATGTCGTGGTGCTG
TCGGTGGTGCTGGACGAAGTGAAGAACAAGAACCTCTCCGTGTACAACAGGCTCAAGACG
CTGTGCACCAACACGGCTC

Homology of Contig U35_8346 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None